Large-scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea)
Data files
Sep 13, 2023 version files 36.79 GB
-
AYK139999_Xanthopastis_timais_GCCAAT_L007_R1.fastq.gz
-
AYK139999_Xanthopastis_timais.fa
-
AZ130014_Scolecocampa_atriluna.fa
-
AZ130017_Charadra_nr_tapa_GCCAAT_L006_R1.fastq.gz
-
AZ130017_Charadra_nr_tapa.fa
-
AZ130019_Heteranassa_mima_ATCACG_L006_R1.fastq.gz
-
AZ130019_Heteranassa_mima.fa
-
AZ130034_Panopoda_rigida.fa
-
AZ130035_Condica_albolabes_ATCACG_L008_R1_001.fastq.gz
-
AZ130035_Condica_albolabes.fa
-
AZ130048_Neumoegenia_poetica_CAGATC_L006_R1.fastq.gz
-
AZ130048_Neumoegenia_poetica.fa
-
BCI130026_Scotura_leucophleps_GATCAG_L006_R1.fastq.gz
-
BCI130026_Scotura_leucophleps.fa
-
BCI130066_Eutelia_sp_TGACCA_L006_R1.fastq.gz
-
BCI130066_Eutelia_sp.fa
-
DV140024_Ptisciana_seminivea_ATGTCA_L008_R1_001.fastq.gz
-
DV140024_Ptisciana_seminivea.fa
-
DV140029_Agape_chloropyga.fa
-
DV140032_Chandica_ayama_CCGTCC_L008_R1_001.fastq.gz
-
DV140032_Chandica_ayama.fa
-
FG120021_Sosextra_grata_AGTCAA_L006_R1.fastq.gz
-
FG120021_Sosextra_grata.fa
-
FG120055B_Nothus_lunus.fa
-
GNV120031_Palthis_asopialis.fa
-
noct96t1234gAA.renamed.fas
-
noct96t1234gNTDegen.renamed.fas
-
PAN130092_Hemiceras_nr_muscosa_GTCCGC_L006_R1.fastq.gz
-
PAN130092_Hemiceras_nr_muscosa.fa
-
PAN130099_Stictoptera_sp_TTAGGC_L006_R1.fastq.gz
-
PAN130099_Stictoptera_sp.fa
-
README.md
-
SW130027HT_Ortopla_iarbasalis_TGACCA_L005_R1.fastq.gz
-
SW130027HT_Ortopla_iarbasalis.fa
-
SW130047_Plusiopalpa_adrasta_CCGTCC_L007_R1.fastq.gz
-
SW130047_Plusiopalpa_adrasta.fa
-
SW130048_Eilema_sp.fa
-
SW130054_Xenochroa_chlorostigma_ACTTGA_L006_R1.fastq.gz
-
SW130054_Xenochroa_chlorostigma.fa
-
SW130092_Sarbanissa_transiens_GTCCGC_L007_R1.fastq.gz
-
SW130092_Sarbanissa_transiens.fa
-
SW130093_Metaemene_sp_AGTTCC_L006_R1.fastq.gz
-
SW130093_Metaemene_sp.fa
-
SW130116_Aegilia_sp_ACAGTG_L005_R1.fastq.gz
-
SW130116_Aegilia_sp.fa
-
SW130121_Nygmia_sp.fa
-
SW130122_Hemonia_sp_GCCAAT_L005_R1.fastq.gz
-
SW130122_Hemonia_sp.fa
-
SW130123_Yepcalphis_dilectissima_CAGATC_L007_R1.fastq.gz
-
SW130123_Yepcalphis_dilectissima.fa
-
SW130125T_Ischyja_subreducta_CTTGTA_L007_R1.fastq.gz
-
SW130125T_Ischyja_subreducta.fa
-
SW130133_Hypocala_violacea_AGTCAA_L002_001_M.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_001_U1.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_001_U2.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_002_M.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_002_U1.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_002_U2.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_003_M.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_003_U1.fastq.gz
-
SW130133_Hypocala_violacea_AGTCAA_L002_003_U2.fastq.gz
-
SW130133_Hypocala_violacea.fa
-
SW130180_Asota_producta_AGTTCC_L002_R1_001.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R1_002.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R1_003.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R1_004.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R2_001.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R2_002.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R2_003.fastq.gz
-
SW130180_Asota_producta_AGTTCC_L002_R2_004.fastq.gz
-
SW130180_Asota_producta.fa
-
SW130217T_Thyas_coronata_AGTTCC_L007_R1.fastq.gz
-
SW130217T_Thyas_coronata.fa
-
ZW510_Oenosandra_boisduvalii_ACTTGA_L008_R1_001.fastq.gz
-
ZW510_Oenosandra_boisduvalii.fa
-
ZW96_Discophlebia_lucasii_TTAGGC_L008_R1_001.fastq.gz
-
ZW96_Discophlebia_lucasii.fa
Abstract
Owlet moths (Noctuoidea; ~43–45K described species; Nieukerken et al. 2011) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world’s most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1,234 genes (946.4 kb of nucleotides) obtained from the genome and transcriptome sequences of 76 species representing all six families. Relationships among the families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal-likelihood estimations. The crown age of Noctuoidea was estimated to be 74.5 Ma, with most families originating before the end of Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large-scale genomic data.
README: Large-scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea)
Raw transcriptome data used for phylogenetic analyses. Transcriptome names are comprised of sample IDs, species names as well as index and read pair information for raw data when applicable.
File names are formatted as follows: [sampleID]_[species name]_[index]_[lane]_[read]_[replicate]
For file SW130180_Asota_producta_AGTTCC_L002_R1_001.fastq.gz:
- sampleID — SW130180
- species name — Asota producta
- index — AGTTCC
- lane — L002
- read — R1
- replicate — 001