Data from: Carbonate shelf development and early Paleozoic benthic diversity in Baltica: A hierarchical diversity partitioning approach using brachiopod data
Penny, Amelia; Hints, Olle; Kröger, Björn (2021), Data from: Carbonate shelf development and early Paleozoic benthic diversity in Baltica: A hierarchical diversity partitioning approach using brachiopod data, Dryad, Dataset, https://doi.org/10.5061/dryad.1g1jwstv0
This upload contains the R scripts and data needed to replicate the analyses and data preparation in the manuscript. The data were originally downloaded from the Paleobiology Database (PBDB, https://paleobiodb.org) and the database of the Geoscience Collections of Estonia (SARV, https://geocollections.info).
To use this code and data, open the file baltic_calculations_neat_revised_26_02_21_neat.R, which explains what the different R scripts do and does most of the calculations and figure plotting in this manuscript.
functions_baltic_cleaning.R, 01_BS_lithologies.R, 02_BS_geokud.R, 03_BS_PBDB.R are for data downloads and cleaning
04_BS_diversity.R does capture-recapture diversity estimation
05_figs.R produces some of the figures.
make_supp_tables.R converts some of the results tables into tables in the Supplementary Material.
Results from the analyses are also included in this upload.
Academy of Finland