Data from: Reassessment of delimitations in the Cyperus margaritaceus-niveus complex
Xanthos, Martin (2023), Data from: Reassessment of delimitations in the Cyperus margaritaceus-niveus complex, Dryad, Dataset, https://doi.org/10.5061/dryad.2ngf1vht5
Background and aims – The Cyperus margaritaceus-niveus complex is a group of ten tropical species from sub-Saharan Africa and Madagascar: C. karlschumanii, C. kibweanus, C. ledermannii, C. margaritaceus, C. niveus, C. nduru, C. obtusiflorus, C. somaliensis, C. sphaerocephalus, and C. tisserantii. They are characterised by a capitate head of white-yellow spikelets and modified culm bases and recent molecular analysis puts them in as a distinct clade. The group lacks a modern taxonomic revision, and the taxa described in the Flora treatments of the past 50 years differ considerably in their circumscription. In this study, morphometric analyses are used to test species limits to establish more stable morphological delimitations of the taxa.
Material and methods – An examination of 15 morphological characters on 489 herbarium specimens was carried out and the data was analysed using Principal Component Analysis (PCA), Linear Discriminant Analysis (LDA) with cross-validation, and Classification and Regression Tree (CART) analysis. Cyperus kibweanus was not further considered due to lack of material.
Key results – Both PCA and LDA showed varying degrees of overlap in the nine remaining taxa, with no single group clearly separating in multivariate space. However, cross-validation clearly showed C. margaritaceus as a distinct entity despite its overwhelming presence in the PCA. Both LDA and CART failed to separate C. niveus as a distinct group as its specimens were dispersed among the other groups. Differing results were obtained for other taxa depending on the type of analysis. C. margaritaceus, C. nduru, and C. sphaerocephalus were divided into two groups by CART but re-examination of the specimens does not definitively support the idea that these infraspecific groups represent separate taxa.
Conclusions – The results show that eight morphospecies are recognised by LDA and six morphospecies by CART. Characters used to separate the taxa in Flora treatments scored high loadings in the analysis showing their high taxonomic utility value. The methods used can be applied to resolving other complexes in the Cyperaceae.
Please see the README document and the accompanying published article: Xanthos, M., Mayo, S.J. & Larridon (2022) Reassessment of delimitations in the Cyperus margaritaceus-niveus complex. Plant Ecology and Evolution. Accepted. Proof in production.
The programs and software required to open the data files are as follows:
R Studio 2022.07.02
Mozilla/5.0 (Windows NT 10.0; Win64; x64), AppleWebKit/537.36 (KHTML, like Gecko), QtWebEngine/5.12.8, Chrome/69.0.3497.128, Safari/537.36