GABAergic synapses between auditory efferent neurons and type II spiral ganglion afferent neurons in the mouse cochlea
Data files
Feb 03, 2025 version files 5.67 GB
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Bachman_et_al_2025.zip
5.67 GB
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README.md
12.04 KB
Abstract
Cochlear outer hair cells (OHCs) are electromotile and implicated in amplification of responses to sound that enhance sound sensitivity and frequency tuning. They send afferent information through glutamatergic synapses onto type II spiral ganglion neurons (SGNs). These synapses are weaker than those from cochlear inner hair cells (IHC) onto type I SGN, suggesting that type II SGNs respond only to intense sound levels. OHCs also receive efferent innervation from medial olivocochlear (MOC) neurons. MOC neurons are cholinergic yet inhibit OHCs due to the functional coupling of alpha9/alpha10 nicotinic acetylcholine receptors (nAChRs) to calcium-activated SK potassium channels. The resulting hyperpolarization reduces OHC activity-evoked electromotility and is implicated in cochlear gain control, protection against acoustic trauma, and attention. MOC neurons also label for markers of GABA and GABA synthesis. GABAB autoreceptor (GABABR) activation on MOC terminals has been demonstrated to reduce ACh release, confirming important negative feedback roles. However, the full complement of GABAergic activity in the cochlea is not currently understood, including mechanisms of GABA release from MOC axons, whether GABA diffuses from MOC axons to other postsynaptic cells, and the location and function of GABAA receptors (GABAARs). We used optical neurotransmitter detection, immunohistochemistry, and patch-clamp electrophysiology to demonstrate that in addition to presynaptic GABAB autoreceptor activation, MOC efferent terminals release GABA onto type II SGN afferent dendrites with postsynaptic activity mediated by GABAARs. This synapse may have roles including developmental regulation of cochlear innervation, fine tuning of OHC activity, or providing feedback to the brain about MOC and OHC activity.
README: GABAergic synapses between auditory efferent neurons and type II spiral ganglion afferent neurons in the mouse cochlea
https://doi.org/10.5061/dryad.2rbnzs80g
Description of the data and file structure
Access this data at: https://doi.org/10.5061/dryad.2rbnzs80g
We have submitted our raw Patch-Clamp Electrophysiology, Immunohistochemistry, and iGABASnFR optical detection data to support the Bachman, Kitcher et al 2025 manuscript.
Notes:
Data and File Structure: All raw data files contained in the .zip file “Bachman et al 2025”
Excel file “Bachman et al 2025 PNAS files” contains a list of file names, types, and additional details for the dataset.
Nikon files are all Nikon LIM .nd2 file type, but are noted in the attached excel file as Nikon LIM file type. .nd2 files can be viewed in Nikon Elements viewers or ImageJ.
Sharing / Access information: Please contact corresponding author catherine.weisz@nih.gov with any questions.
Folder: GABA A R immunos Fig 4
Folder: “GABA A R immunos Fig 4” contains confocal imaging Z-stacks from dissected cochlear preparations from transgenic mice.
· ChAT Cre tdT P20 Row2sec2_stack_2 is a Nikon elements .nd2 file. The data is from post-natal day 20 ChAT-IRES-Cre (“CIJ”, Cre recombinase expressed in cholinergic neurons) x tdTomato (“tdTom” or “tdT” reporter mouse line in which the red fluorescent protein is produced in Cre-positive cells) mice. Immunohistochemistry procedures are detailed in the methods. The file contains multiple imaging planes that were combined into the projection images shown in the figure panels. For the manuscript, the image was cropped to include only the outer hair cell region. The imaging channels included green (anti-GABA A beta 3 receptor, converted to yellow for colorblind palette in published image), red (tdTomato reporter labeling in cholinergic MOC axons, converted to magenta), far-red (purple, anti-GAD label, converted to blue in final image).
· Ngn1 Cre tdt P20 r3s3_40x_crop is a Nikon Elements .nd2 file. The data is from post-natal day 20 Neurogenin1-CreERT2 (Cre recombinase expressed in spiral ganglion neurons in the cochlea, random sparse expression in the absence of tamoxifen) x tdTomato (reporter mouse line in which the red fluorescent protein is produced in Cre-positive cells) mice. Immunohistochemistry procedures are detailed in the methods. The file contains multiple imaging planes that were combined into the projection images shown in the figure panels. For the manuscript, the image was cropped to include only the outer hair cell region. The imaging channels included green (anti-GABA A beta 3 receptor, converted to yellow for colorblind palette in published image), red (tdTomato reporter labeling in a random sparse subset of type II SGN, converted to magenta), far-red (purple, anti-GAD label, converted to blue in final image).
Folder: GAD immunos devel Fig 1
Folder: “GAD immunos devel Fig 1” contains confocal imaging Z-stacks from dissected cochlear preparations from transgenic mice.
· Five Nikon Elements .nd2 files that can be read in Nikon Elements viewers or ImageJ are contained in the folder. Immunohistochemistry procedures are detailed in the methods. The file contains multiple imaging planes that were combined into the projection images shown in the figure panels. For the manuscript, the image was cropped to include only the outer hair cell region. File naming uses our original file names.
o In four of the images:
05JUN22 P7 CIJ x tdT GAD65_488_Myo7a_647 A1C1Med 60xCrop002
A_P9_Medial_60x_405Dapi_488GAD65_561tdTom_647Myo7a_Wu
21JUN22 P11 CIJxtdT GAD65_488Myo7a_647 A2C1Med 60xCrop001
23JUN22 P13 CIJxtdT GAD65_488_Myo7a_647 A1C1Med 60xCrop2
mice were euthanized at different ages (P7, P9, P11, or P13) to examine both the development of MOC efferent axons in the cochlea (identified in ChAT-IRES-Cre (CIJ) x tdTomato (tdTom or tdT) reporter labeling, red channel converted to magenta for colorblind palette in final figure), as well as the developmental pattern of their GABAergic nature as determined by immuno labeling for the GABA synthetic enzyme GAD (green in original image, converted to blue in published figure for colorblind palette). Localization of MOC axons relative to OHCs visible due to immunolabeling of the OHCs with anti-MyoVIIa antibody (far-red in originals, shown in greyscale in individual panels). For these images, the animal age is included in the file name.
o For the fifth image Row1sec3_stack_1, the data is from a P20 ChAT-IRES-Cre ; tdTomato mouse. Image channels are green (GAD, converted to blue in final image), red (tdTomato genetic label of MOC axons, converted to magenta), and far-red (anti-synapsin antibody, converted to yellow).
Folder iGABASnFR
Folder “iGABASnFR” contains Nikon Elements .nd2 files that can be opened in Nikon Elements, a Nikon Elements viewer, or ImageJ. For these experiments, the iGABASnFR optical GABA indicator (green channel) is imaged using confocal timelapse imaging at between 7 and 16 frames per second, all at the same Z-plane. In some experiments with transgenic animals, the tdTomato reporter was imaged in the red channel. In some images, the “transmitted detector (TD)” was used to provide a bright-field-like image to aid in focal plane determination. The timing of the stimulation (exogenous GABA or acetylcholine application, or MOC axon electrical stimulation) is provided in research methods.
Variables used:
ROI = region of interest, a biologically relevant area of an image selected for fluorescence analysis
delF/F = delta F / F, the change in fluorescence compared to baseline fluorescence for a given ROI
File naming conventions: year-month-day _ preparation (cochlea#, equivalent to animal #, each day starts over with 1)_region of cochlea imaged (starts over with 1 for each prep) _ 00# - repetition in this location (usually first repetition per region used, unless of experimental problem such as stimulator not turned on).
Folder Structure: “iGABASnFR” contains three subfolders. “ACh exogenous iGABASnFR” contains 6 files in which ACh was exogenously applied during the time series imaging. “GABA exogenous iGABASnFR” contains 6 files in which GABA was exogenously applied during the time series imaging. “MOC stim iGABASnFR” contains two subfolders, “P8-11 MOC stim iGABA SnFR” contains 20 files from post-natal day 8 to 11 mice. The MOC axons were stimulated electrically during these experiments. “P14-15 MOC stim iGABA SnFR” contains 6 files from post-natal day 14-15 mice. The MOC axons were stimulated electrically during these experiments.
Folder: type II SGN recordings
Folder “type II SGN recordings” contains patch-clamp electrophysiology data for experiments and related results for figure 5. Data from 41 cells are included, with some of the cells being included in multiple sections of figure 5 (eg data included in both GABA application numbers and gabazine data). These data were recorded using either the Molecular Devices pClamp software version 11 or the HEKA Patchmaster EBC10 software. Files can be opened with various software:
Molecular devices (.abf) files can be opened with Clampfit software. This can be downloaded as part of the pClamp software suite (pClamp, AxoScope, and Clampfit; free download, does not require dongle unless the amplifier is being used to collect new data) at:
- In addition, various converters can be used to convert .abf files to Matlab or python formats (eg. https://www.mathworks.com/matlabcentral/fileexchange/6190-abfload)
HEKA files (.dat files are the primary data files, .bak, .mrk, .onl, .pul, and .sol files are companion files that automatically get opened with the associated .dat file that has the same name) can be opened with HEKA Patchmaster (not Patchmaster Next aka PMN) or HEKA Fitmaster:
- https://www.heka.com/downloads/downloads_main.html#down_fitmaster
- https://www.heka.com/downloads/downloads_main.html#down_patchmaster (acquisition software)
- Full functionality requires purchase of a software dongle, but software can be run in the ‘demo’ mode to open and view data. Note: opening of some files generates a “Too many sample points” error, use the “My risk” button to clear the error and proceed. Open from within the fitmaster software, and load the .dat file.
- File converters are available for Matlab and python, for example this python converter: https://github.com/campagnola/heka_reader
- In addition, .dat files were exported as .txt files for opening in any text editor or in Microsoft Excel. For these files, each column represents a ‘sweep’ which can be either a single sweep from a different voltage step in an “IV” experiment, or a single sweep from a drug application experiment. The voltage command (V) data and corresponding current response (I) data are in adjacent columns. Column titles have titles that detail the type of experiment (eg. “TypeII_IV_Vclmp” is an “IV” type recording (see abbreviations below) from a type II neuron in the Vclamp or voltage-clamp configuration, with the numbers responding to the experiment number within the file, and the sweep number. All data from a single cell is included in the same .txt file, including IV curves, drug application, or longer single voltage steps.
In all cells GABA (1 mM) is applied to the tissue during the recording from a local gravity-fed pipette, with the timing noted either by a “tag” within the file trace or by the digital output amplifier channel which was used to control valves to apply the GABA-containing solution. In some experiments, the GABA A receptor blocker gabazine was bath applied prior to GABA application, with the details of the gabazine application detailed in the attached excel file (“Bachman et al 2025”) contained within the .zip file structure. Most data were recorded at a holding potential of -80 mV, but in some experiments the membrane potential was stepped to a different holding potential prior to GABA application, detailed in the excel file.
File naming conventions: All experiments are identified by a code containing letters (initials of experimenter: Julia Bachman or Cat Weisz) and a number code, original cell IDs and file names are being used.
Variables and abbreviations:
SGN = spiral ganglion neuron
OHC = outer hair cell
GABA = gamma aminobutyric acid, an inhibitory neurotransmitter
mV = milli volts, a unit of electrical potential in neurons
pA = pico-amps, unit of electrical measurement of currents in neurons
mM = milli Molar concentration
Vhold = membrane holding voltage, the voltage that the internal neuron state was set at using the patch-clamp amplifier
IV = current voltage, shorthand for a type of voltage-clamp experiment in which the neuron membrane potential is set to different holding potentials from -110 to ~+20 mV in 10 mV increments while recording the resulting currents in the neuron
Appl = shorthand for ‘application’ pipette, a gravity fed pipette used to apply drugs (usually GABA) focally to the tissue
Code / Software
No additional code was generated for this work.
Methods
Mice and ethical approval
Animal procedures followed National Institutes of Health guidelines, as approved by the National Institute of Neurological Disorders and Stroke/National Institute on Deafness and Other Communication Disorders Animal Care and Use Committee. Male and female mice were used in experiments. Mouse lines included wildtype (WT) C57BL/6J (Jax Cat No: 000664), ChAT-IRES-Cre (Jax Cat No: 028861), ChAT-IRES-Cre Δneo (Jax Cat No: 031661), Ngn-CreERT2 (Jax Cat No: 008529), Ai14 tdTomato reporter mice (Jax Cat No: 007914), and Bhlhb5-Cre (on Sv/129, C57BL/6J mixed background). Mice were housed on a 12/12 hr light/dark cycle, with continuous availability of food and water. Mice were anesthetized by carbon dioxide inhalation at a rate of 20% of anesthesia chamber volume per minute and then killed by decapitation.
Immunohistochemistry
Mice aged postnatal day (P)5- 20 were euthanized as above and used for immunohistochemical experiments in cochlear whole mount preparations. Temporal bones were immediately removed and fixed via perfusion of 1 ml cold 4% PFA (Electron Microscopy Science) in 1X PBS through the oval and round windows, with 20-30 min post-fix in cold 4% PFA. Cochleae were washed with 1X PBS perfused through the round and oval window, then washed 3x 10-15 min in 1X PBS. Cochleae were either fully or partially dissected, followed by blocking non-specific labeling (10% normal goat/donkey serum in 0.5% Triton X-100/1X PBS) for 1-2 hr, and washed for 15-20 min in 1X PBS. For experiments using an anti-GAD antibody (antibodies listed in Table M1), cochleae underwent an additional block in M.O.M. buffer (3-4 drops in 2.5 ml 1X PBS; Vector MKB-2213-1) at room temperature (RT) for 1 hr. After a 15–20-min wash, cochlear turns were incubated in primary antibody in blocking solution (Table M1) at 4ºC for 2-48 hr. Tissues were washed 3x 20 min in 0.25% TX-100/1X PBS, then incubated in secondary antibody in 5% normal goat/donkey serum and 0.25% TX-100/1X PBS for 1-2 hr at RT. Tissues were washed for 15 min in 0.25% TX-100/1X PBS with DAPI (1:5000), washed 2x 10 min in 0.25% TX-100/1X PBS, then washed 15-20 min in 1X PBS.
Antibody-labeled cochlear whole mounts were imaged on a Nikon A1R inverted microscope with 40X or 60X objectives, using Nikon Elements software v5.30.
Antibody |
Manufacturer / Part Number |
Dilution |
Secondary Antibody |
Anti-GAD65
*Note: used with M.O.M buffer (MKB-2213-1): 3-4 drops in 2.5 ml PBS |
Millipore MAB351R |
1:500-1:1000 |
Fisher A-21131: AlexaFluor® 488 Goat Anti-Mouse IgG2a (1:800) or Fisher AB_2340862: AlexaFluor® 647 AffiniPure Donkey Anti-Mouse IgG (1:800) |
GABAAβ3R |
Novus Bio / NB300-199
|
1:250-1:600 |
Fisher: A-21206 AlexaFluor® 488 Donkey anti-Rabbit IgG (H+L), (1:800) |
Synapsin |
Millipore AB1543P |
1:600 |
Fisher: A-21206 AlexaFluor® 488 Donkey anti-Rabbit IgG (H+L), (1:800) |
Myosin VIIa |
Proteus Bioscience 25-6790 |
1:500 |
Jackson Immunoresearch 711-605-152, Donkey Anti-Rabbit 647, (1:800) |
Table M1. Antibodies used in immunohistochemistry experiments.
Patch-clamp recordings
For patch-clamp recordings from outer hair cells (OHCs) and type II spiral ganglion neuron (SGN) afferent dendrites, the cochleae of P11-13 (OHC) or P5-10 (type II SGN) mice were dissected and placed under an insect pin affixed to a round glass coverslip with Sylgard (Dow Chemicals, Midland, MI, USA). Tissue was initially visualized using a Nikon Eclipse NI-E microscope with a QI-Click camera or FN-1 microscope with a pco.edge camera, with a 4X air objective for positioning of stimulation electrodes, drug application pipettes, or suction electrodes. Recordings were then performed using 40X or 60X water immersion objectives with DIC optics and an additional 1.25-2X magnification. For experiments with visualization of fluorescent cells, tissue was visualized under epifluorescent illumination using a Sola or Aura II lamp (Lumencor, Beaverton, OR, USA).
For OHC recordings, evoked inhibitory postsynaptic currents (IPSCs) were obtained from the first row of OHCs in the whole-cell voltage-clamp recording configuration in response to extracellular electrical stimulation of the MOC fibers 54,55. For type II SGN dendrite recordings, fibers under OHCs were exposed by removal of 4-6 OHCs using a glass pipette with a 10-15 µm diameter-tip. Patch-clamp recordings were performed using 1 mm diameter glass micropipettes (WPI: World Precision Instruments, Sarasota, FL, USA) pulled (Sutter P1000, Sutter Instrument Company, Novato, CA, USA) to resistances of 3-6 MΩ (OHC recordings) or 6-10 MΩ (type II SGN dendrite recordings). Dissection and recording ‘extracellular’ solution contained (in mM): 5.8 KCl, 155 (OHC recordings) or 150 (all else) NaCl, 0.9 MgCl2, 1.3 CaCl2, 0.7 NaH2PO4, 5.6 glucose, and 10 HEPES. The pH was 7.4, adjusted with 1N NaOH, and osmolarity = ~315 mOsm. Extracellular solution at RT was perfused through the recording chamber at a rate of ~1-2 ml/min. Internal solutions for type II SGN recordings contained (in mM): 50 KCl, 80 K-methanesulfonate, 5 MgCl2, 0.1 CaCl2, 5 EGTA, 5 HEPES, 5 Na2ATP, 0.3 Na2GTP, and 5 Na2-phosphocreatine. The pH was adjusted to 7.2 with KOH. 0.01 mM AlexaFluor hydrazide 488 or 594 was added during some experiments to allow visualization of cell morphology to confirm neuron identity. The osmolarity = ~290 and the liquid junction potential = -9 mV. Internal solutions for OHC recordings contained (in mM): 140 KCl, 3.5 MgCl2, 0.1 CaCl2, 5 EGTA, 5 HEPES, and 2.5 Na2ATP. The pH was adjusted to 7.2 with KOH and osmolarity = 283-290 mOsm. Drug application was performed using either a large bore gravity-fed glass pipette positioned close to the cochlear tissue (GABA or ACh application) or via addition to the re-circulating bath solution. Drugs were obtained from Sigma-Aldrich, Inc. (St. Louis, MO, USA), Alomone Labs (Jerusalem, Israel), and Thermo Fisher Scientific (Waltham, MA, USA).
Patch-clamp recordings were performed in voltage-clamp using a Multiclamp 700B amplifier with 1550B or 1322A Digidata controlled by Multiclamp Commander v11.2 and pClamp v11.2 (Molecular Devices, Silicon Valley, CA, USA) or a HEKA EPC 10 amplifier controlled by PatchMaster v2.91 (HEKA Instruments Inc., Holliston, MA, USA). Recordings were sampled at 50 kHz and lowpass filtered at 10 kHz. OHCs were held at -40 mV for recordings of MOC to OHC synaptic activity. Type II SGN dendrites were held at -80 mV for most recordings unless stated otherwise. To test the reversal potential of GABAergic currents, the type II SGN dendrite membrane potential was stepped to holding voltages from -80 to +20 mV in 20 mV increments for 10 seconds prior to GABA application. In all patch-clamp experiments, GABA application was performed once per 10 min.
Electrical stimulation of MOC axons
Endogenous neurotransmitter release from MOC axons was evoked using electrical axon stimulation via ~10-20 µm diameter-glass micropipettes (Sutter) containing extracellular solution described above and placed ~20-30 µm modiolar to the inner spiral bundle (ISB). For OHC recordings, the stimulation electrode was positioned below the IHC aligned with the OHC under study. For optimal stimulation, cochlear supporting cells were gently removed by applying negative pressure through a glass pipette with a broken tip. The MOC axon stimulation was applied using an electrical stimulus isolation unit (Iso Stim, AMPI or SIU isolation unit A-M System). Stimulation timing and rate (for imaging experiments: 50 Hz, 1 second train duration) was controlled by the PClamp software during both patch-clamp and optical experiments.
Estimation of the quantal content of transmitter release.
Under the assumption that evoked synaptic events in synapses with a low release probability follow a Poisson distribution, the quantal content of transmitter release (m) upon electrical stimulation of the MOC fibers was estimated by the “method of failures”: m = ln (N/N0)56, where N is the total number of stimuli and N0 the number of failures. Protocols of 100 stimuli at a frequency of 1 Hz were used to estimate m. At this stimulation frequency, neither the kinetics nor the amplitudes of the evoked responses changed throughout the protocol. To test the effect of drugs or toxins on the quantal content of evoked ACh release from the MOC synaptic terminals, m was first assessed 2-3 times in order to establish a mean control value (mc) before incubating the tissue with the drug or toxin to evaluate changes in neurotransmitter release. The tissue was then incubated for the time necessary to reach a plateau in the compound’s effect (ranging from 5 to 15 minutes, depending on the compound), after which the stimulation protocol was repeated (2-3 times).
Posterior semi-circular canal (PSC) adeno-associated virus (AAV) injections
Posterior semicircular canal (PSC) injections to introduce adeno-associated virus (AAV) particles into the cochlea were performed as described in 57, using aseptic procedures. In brief, neonatal pups (P0-2) were hypothermia-anaesthetized for ~5 min until they did not respond to stimulation, and then remained on an ice pack for the duration of the procedure. A postauricular incision was made using micro-scissors and the skin was retracted. The PSC was identified under a surgical microscope and a glass micropipette pulled to a fine point was positioned using a micro-injector (WPI). For each mouse only one ear was injected with ~1.2 µL AAV solution containing gene sequences encoding optical GABA indicator (iGABASnFR) variants: iGABASnFR.F102G or FLEX.iGABASnFR2.0. The incision was closed using a drop of surgical glue. About 4-5 pups per litter were injected. Pups were recovered to normal body temperature on a warming pad, while receiving manual stimulation to aid recovery. To increase the likelihood of the dam accepting the pups post-surgery, each pup was gently rubbed with bedding from the home cage and, if possible, urine that was collected from the dam using a cotton-tipped applicator, before returning to their home cage. In addition, mineral oil was applied to the dam’s nose to block detection of any surgical or human odors on the pups prior to being returned to the home cage.
iGABASnFR imaging
For fluorescence imaging of iGABABSnFR-transduced cells in acutely dissected cochlear preparations, the euthanasia, dissections, extracellular solutions, drug application, and electrical stimulation of MOC axons were as above for patch-clamp recordings. iGABASnFR.F102G was obtained as plasmids from Addgene.org (Watertown, MA, USA). The plasmids were then packaged by SignaGen (Frederick, MD, USA) into AAV particles with the PHP.eB serotype and human synapsin (hSyn) promotor, the combination of which results in expression specifically in neurons, although a few hair cells also exhibited expression. iGABASnFR2-containing plasmids were kindly gifted by the GENIE Project Team at the Janelia Research Campus, Howard Hughes Medical Institute (Ashburn, VA, USA), and similarly packaged into AAV particles.
iGABASnFR imaging experiments were carried out using non-Cre-dependent virus injected into C57BL/6J mice (P14-15) or Cre-dependent (FLEX) virus injected into Ngn1-CreERT2; tdTomato or Bhlhb5-Cre; tdTomato mice (P8-11), which result in iGABASnFR expression specifically in neurons. There was no difference in the baseline fluorescence of FLEX.iGABASnFR2.0 between Bhlhb5-Cre or Ngn1CreERT2 mice (Bhlhb5-Cre mean baseline fluorescence: 36.4 ± 16.4 arbitrary units (AU), n = 14, Ngn1CreERT2 mean baseline fluorescence 40.6 ± 11.3 A.U., n = 3 preparations, One-way ANOVA p = 0.92262), so results were pooled between these two genotypes for the P8-11 mouse experiments. The iGABASnFR or tdTomato fluorescence was localized to cells with the clear morphology of type II SGN dendrites. In experiments in which OHCs were also labeled, the focal plane of imaging was set to image only type II SGNs, or in the case of curved tissue that had focal planes containing both OHCs and type II SGN fibers, only the type II SGN-containing regions-of-interest (ROIs) were analyzed (for analysis see Image Processing, below). Although unlikely, we cannot completely exclude the possibility that iGABASnFR was aberrantly expressed in MOC neurons due to spread of AAV particles via cerebrospinal fluid (CSF). However, analysis was restricted to regions with clear type II SGN morphology, and we did not detect expression in MOC axon terminals.
iGABASnFR imaging was performed on a Nikon A1R upright confocal microscope using resonant scanning in both red (568 nm, for tdTomato imaging in cochlear neurons from transgenic mice) and green (488 nm, for iGABASnFR variants) channels. In a subset of experiments with exogenous application of GABA or ACh, but not in experiments with electrical stimulation of MOC axons, the Nikon ‘denoise’ function was utilized during imaging, which improves image quality by estimating and removing the Poisson-distributed shot noise, without changing signal intensity. In some experiments, a DIC-like image was simultaneously collected using the transmitted light detector, which converts the laser signal into a greyscale 3D image. Imaging settings included line averaging of 4-16 lines, bi-directional scanning, 512-1024 resolution, and frame rates of ~7-15 frames per second.
Image processing
Fluorescence intensity changes were measured in iGABASnFR-transduced neurons using ImageJ (NIH, Bethesda, MD, USA). A maximum intensity projection of the green (iGABASnFR) image stack was generated and then thresholded to set the regions to be used for ROI selection. Thresholds were set to 121, but manually adjusted in the case of tissue with brighter or dimmer fluorescence background (mean = 119 ± 20). The ‘analyze particles’ function was used to automatically draw ROIs around the iGABASnFR-expressing structures of interest, and each ROI was classified by eye as type I or type II SGNs from either fluorescence or transmitted detector images. It was not possible to identify individual neurons from either tdTomato or iGABASnFR images, so ROIs likely contain multiple neuronal segments. These ROIs were then used to measure fluorescence intensities in the original image stack for each frame. Fluorescence intensity values per ROI and per frame were imported into Origin v2021 (Origin Lab, Northhampton, MA, USA). The fluorescence baseline was measured for 1 second prior to stimulus onset (electrical MOC axon stimulation) or 10 seconds prior to drug application (exogenous GABA or ACh application). The iGABASnFR responses were determined for the 30 seconds of exogenous ACh or GABA application compared to the 10 seconds prior to drug application. For experiments utilizing electrical stimulation of neurotransmitter release from MOC axons, we made a binary determination of whether each ROI had a positive ‘response’ to the axon stimulation. First, we measured the mean and standard deviation of the baseline fluorescence (1 second prior to MOC axon stimulation). Then, we measured the maximum fluorescence following MOC axon stimulation. To prevent a noisy fluorescence signal from giving an artificially high ‘maximum’ intensity, we used a rolling average (5 frames before, 5 frames after) to smooth the trace, and determined the fluorescence maximum from this rolling average trace. An ROI had a positive ‘response’ if the maximum fluorescence following axon stimulation was greater than two standard deviations above the baseline mean (mean +2SDs). Next, to determine the magnitude of the response to MOC axon stimulation we calculated the ΔF/F of the fluorescence. This was defined as the maximum fluorescence following MOC axon stimulation minus the mean baseline fluorescence, divided by the mean baseline fluorescence.
Quantification and Statistical Analyses
Statistics were performed in Origin v2021-2023 or GraphPad Prism 6 (RRID:SCR_002798, Boston, MA, USA). Data were tested for normality using a Shapiro-Wilk test. Statistical tests included a one-way ANOVA for parametric tests and one-way repeated measures ANOVA with post-hoc pairwise Scheffe tests. For non-parametric statistical analyses, with two groups, a Wilcoxon rank sum was applied, and for non-parametric comparisons of more than two groups, a Friedman test followed by a Dunn multiple-comparison test was used. Figures were prepared in Origin, ImageJ, and Adobe Illustrator (Adobe, San Jose, CA, USA).
Methods References
Ballestero, J. et al. Short-term synaptic plasticity regulates the level of olivocochlear inhibition to auditory hair cells. J. Neurosci. 31, 14763–74 (2011).
Vattino, L. G., Wedemeyer, C., Elgoyhen, A. B. & Katz, E. Functional Postnatal Maturation of the Medial Olivocochlear Efferent–Outer Hair Cell Synapse. J. Neurosci. 40, 4842–4857 (2020).
DEL CASTILLO, J. & KATZ, B. Quantal components of the end-plate potential. J. Physiol. 124, 560–73 (1954).
Isgrig, K. & Chien, W. W. Posterior Semicircular Canal Approach for Inner Ear Gene Delivery in Neonatal Mouse. J. Vis. Exp. (2018) doi:10.3791/56648.