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Data and analysis for: Divergent occurrences of juvenile and adult trees are explained by both environmental change and ontogenetic effects

Citation

Heiland, Lukas (2021), Data and analysis for: Divergent occurrences of juvenile and adult trees are explained by both environmental change and ontogenetic effects, Dryad, Dataset, https://doi.org/10.5061/dryad.31zcrjdnc

Abstract

This is a mirror of the github repository https://github.com/lukasheiland/Divergence at 2021-12-16, which provides code and aggregated data to reproduce the simulations and analyses in "Divergent occurrences of juvenile and adult trees are explained by both environmental change and ontogenetic effects". Session info is provided in 'DEF_sessionInfo__2020-11-02.*'.

The simulations are contained in
- 'Sim ontogenetic stages.R'

The main script for the empirical analysis
- 'Fit beta.R' performs the complete analysis with already aggregated data that is provided with 'Data/taxtables_pres_thresholdsubset.rds'.

In addition, several other scripts are provided for reference, which can be explored interactively, but would need additional unanomyzed data to be run completely:
- 'Prepare data.R' had been run for wrangling the unanonymized data prior to the analysis.
- 'Publishing/Publish fit.R' creates maps, plots, and tables. (For maps, original coordinates would be necessary.)