Data from: Testing the evolutionary potential of an alpine plant: Phenotypic plasticity in response to growth temperature outweighs parental environmental effects and other genetic causes of variation
Data files
Jul 22, 2024 version files 184.45 KB
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Data_F3_Wahlenbergia_plasticity_Final.xlsx
182.38 KB
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README.md
2.07 KB
Abstract
Phenotypic plasticity and rapid evolution are fundamental processes by which organisms can maintain their function and fitness in the face of environmental changes. Here we quantified the plasticity and evolutionary potential of an alpine herb Wahlenbergia ceracea. Utilising its mixed-mating system, we generated outcrossed and self-pollinated families that were grown in either cool or warm environments, and that had parents that had also been grown in either cool or warm environments. We then analysed the contribution of environmental and genetic factors to variation in a range of phenotypic traits including phenology, leaf mass per area, photosynthetic function, thermal tolerance, and reproductive fitness. The strongest effect was that of current growth temperature, indicating strong phenotypic plasticity. All traits except thermal tolerance were plastic, whereby warm-grown plants flowered earlier, grew larger, produced more reproductive stems compared to cool-grown plants. Flowering onset and biomass were heritable and under selection, with early flowering and larger plants having higher relative fitness. There was little evidence for transgenerational plasticity, maternal effects, or genotype-by-environment interactions. Inbreeding delayed flowering and reduced reproductive fitness and biomass. Overall, we found that W. ceracea has the capacity to respond rapidly to climate warming via plasticity, and the potential for evolutionary change.
https://doi.org/10.5061/dryad.34tmpg4s9
Dataset contains data from a glasshouse experiment under different growth temperature treatments on over 1,000 F3 generation plants from controlled crosses and self-pollination of F2 parental plants that were also exposed to two temperature treatments. We collected data on multiple phenotypic traits of the F3 plants and analysed phenotypic plasticity, heritability, and selection on these data using Bayesian mixed models including additive genetic (pedigree) and maternal effects.
Description of the data and file structure
The data is contained in three datasheets in one .xlsx file: the main experiment dataset, pedigree, and capsule mass data. A key is provided to give explanation for the column names and variables included in these sheets. Note that NA values in the pedigree indicates simply that we do not know the relatedness information for the generation prior to the F0 plants. NA values in the main dataset represent individual plants that were not measured for the particular trait (due to not having 8 individuals for the F3 line, premature death, not flowering, or the hailstorm affecting harvest and trait measurements). Details of the experiment that led to these missing values are provided in the Open Access publication: https://doi.org/10.1093/jxb/erae290.
An Rmarkdown .html output file is also provided to demonstrate the R script used and includes the output of analyses, Tables, and Figures.
Sharing/Access information
Data will be linked to the published paper.
Code/Software
R code is provided in the .html file. R version 4.3.1.
Loaded packages:
devtools v2.4.5
brms v2.20.1
MCMCglmm v2.35
ggplot2 v3.4.4
ggpubr v0.6.0
sjPlot v2.8.15
dplyr v1.1.4
performance v0.10.4
scales v1.3.0
Dataset was collected from a large glasshouse experiment of Wahlenbergia ceracea (waxy bluebell) plants grown under two growth temperatures. This experiment follows on from years of controlled environment and controlled crosses to generate F3 lines, including growing the F2 parents under two growth temperatures as well. Phenotypic trait measurements were taken using a variety of standard ecophysiological measurements, and these include measuring flowering onset phenology, chlorophyll content (SPAD units), Leaf Mass per Area (LMA), photosystem II efficiency and capacity (FV/FM, φPSII), heat and cold tolerance (Tcrit-hot and Tcrit-cold from temperature dependent chlorophyll fluorscence; T-F0), biomass, numbers of reproductive stems, seed and capsule mass. Details are provided in full in the manuscript. Post-data collection processing of dataset .csv files were done using R v4.3.1. The R script used for data analyses, Tables, Figures, and supporting data is provided as part of the data archiving as an html Rmarkdown output.