Data from: Towards environmentally friendly finfish farming: A potential for mussel farms to compensate fish farm effluents
Data files
Jan 02, 2025 version files 17.92 KB
-
Fish_DEB.zip
8.03 KB
-
Mytilus_DEB.zip
8.32 KB
-
README.md
1.58 KB
Abstract
Aquaculture is seen as a possible solution to meet the rising demand for fish but only if the sector reduces its use of wild fish in feed as well as its environmental impacts. The cultivation of extractive species along with fish farming (the integrated multi-trophic aquaculture system, IMTA) has the potential to mitigate the adverse environmental effects of fish farming. The dynamic energy budget (DEB) modelling is a powerful tool to be used in different aquaculture settings to achieve the Blue Growth goals set by the commission.
This study explored the potential of mussels for bioremediation at finfish farms to develop environmentally sustainable finfish farming solutions in the eutrophic Baltic Sea region. The study integrated the DEB models of blue mussels (Mytilus edulis/trossulus) and rainbow trout (Oncorhynchus mykiss) and a regional hydrodynamic-biogeochemical model to explore the potential of mussel farming to fully compensate for nutrient discharges from finfish farms.
The DEB models demonstrated that despite suboptimal mussel growth conditions (low salinity), mussel farming has the potential to fully compensate for the discharge of nutrients from fish farms and thereby provide a solution for sustainable fish farming in the Baltic Sea region. As such, fish farming may become a necessary enabler of economically sustainable mussel farming in the region. Mussel farming facilitates finfish farming licensing whereas finfish farming covers some costs of mussel farming thereby increasing the economic feasibility of this activity in the region.
README: Data from: Towards environmentally friendly finfish farming: A potential for mussel farms to compensate fish farm effluents
https://doi.org/10.5061/dryad.3ffbg79pd
Description of the data and file structure
This is the R script and parameter files used to run the dynamic energy budget (DEB) models presented in the manuscript. As input data, the model requires environmental data (temperature, salinity, and chlorophyll in water), which are freely available from the Copernicus portal.
How to use these scripts:
- Single-folder setup: Place all files from the zipped archive (including scripts and parameter files) into a single folder. This same folder should also contain the environmental data downloaded from Copernicus or another source.
- Running the model: In R, set your working directory to this folder and run
run_only_this_script.R
. - Adjusting input parameters: If needed, you can modify input parameters (e.g., model type, number of organisms, dates) at the beginning of
run_only_this_script.R
. - Script behavior: This main script automatically calls any additional scripts (for fish or mussel models) and finds the parameter files stored in the same folder. It also reads and processes the environmental data found there.
With this setup, you do not need to manage any subdirectories—just keep everything together, and the scripts will handle the rest.
Code/software
The code is compatible with R software and can be executed directly within the R environment.