Raw data and R code for: Negative effects of urbanisation on diurnal and nocturnal pollen-transport networks
Data files
May 25, 2023 version files 14.48 MB
-
Ellis_et_al2023_ELE__code.Rmd
80.10 KB
-
embryophyte_environmental_sample.seq
13.60 KB
-
figure_1_stacked_barchart.csv
132 B
-
Figure_1_T1_matrix.csv
34.93 KB
-
Figure_1_T2_matrix.csv
50.90 KB
-
Figure_1_T3_matrix.csv
24.24 KB
-
figure_2_nmds_all_1.csv
38.02 KB
-
figure_2_nmds_t1_1.csv
20.10 KB
-
figure_2_nmds_t2_1.csv
28.06 KB
-
figure_2_nmds_t3_1.csv
14.80 KB
-
Insect_data_1.csv
42 KB
-
insect_data_weighted_networks.csv
42.50 KB
-
insect_metrics_figure_3.csv
150.80 KB
-
ITS2_asvs.csv
1.05 MB
-
ITS2_combing_manual_1.csv
59.76 KB
-
ITS2_MiSeq_asv_counts.tsv
2.62 MB
-
meta_data_1.csv
4.60 KB
-
meta_read_depth.csv
12.67 KB
-
PLANT_DATA.csv
55.55 KB
-
plant_matrix_for_networks.csv
156.52 KB
-
plant_matrix_for_weighted_networks.csv
155.14 KB
-
rbcl_Manualsort_2.csv
127.33 KB
-
rbcl_MiSeq_asv_counts.tsv
2.96 MB
-
rbcl_MiSeq_asv.csv
2.80 MB
-
README_rawdata_2.txt
16.10 KB
-
seqtab.nochim.tsv
3.67 MB
-
table_1_plant_summary.csv
14.63 KB
-
table_S11_plant_types.csv
51.94 KB
-
weighted_matrix_1.csv
175.41 KB
Abstract
Pollinating insects are declining due to habitat loss and climate change, and cities with limited habitat and floral resources may be particularly vulnerable. The effects of urban landscapes on pollination networks remain poorly understood, and comparative studies of taxa with divergent niches are lacking. Here, for the first time, we simultaneously compare nocturnal moth and diurnal bee pollen-transport networks using DNA metabarcoding and ask how pollination networks are affected by increasing urbanisation. Bees and moths exhibited substantial divergence in the communities of plants they interact with. Increasing urbanisation had comparable negative effects on pollen-transport networks of both taxa, with significant declines in pollen species richness. We show that moths are an important, but overlooked, component of urban pollen-transport networks for wild flowering plants, horticultural crops, and trees. Our findings highlight the need to include both bee and non-bee taxa when assessing the status of critical plant-insect interactions in urbanised landscapes.
Usage notes
This is an R markdown file that will use the datasets attached to this project. It will reproduce all the analysis (in the order it appears in the methods of this manuscript).