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Data from: "Discovery and characterization of 80 SNPs and 1,624 SSRs in the transcriptome of Atlantic mackerel (Scomber scombrus, L)" in Genomic Resources Notes Accepted 1 June 2015 to 31 July 2015

Montes, Iratxe1; Langa, Jorge2; Vilas, César3; Helyar, Sarah J.4; Álvarez, Paula5; Conklin, Darrell6; Estonba, Andone1

Published Aug 17, 2015 on Dryad. https://doi.org/10.5061/dryad.3rg62

Data files

Aug 17, 2015 version files 174.58 MB

Abstract

This paper reports on SNP discovery in the Atlantic mackerel transcriptome, using next generation sequencing technologies and applying developed methodology already proven successful for the European anchovy. A total of 9,966 high quality transcriptome contigs were assembled, from which 951 putative SNPs were discovered. In all, 479 putative SNPs and 1,624 simple sequence repeats (SSRs) suitable for genotyping were identified. A subset of 96 was selected for genotyping; from these, 80 SNPs were considered polymorphic and reliably scored after genotyping of 105 individuals from three locations in the Eastern Atlantic Ocean. These markers will be valuable for future studies on population genetic structure assessment and for product tracing.