Whole-body physiology model to simulate respiratory depression of fentanyl and associated naloxone reversal
Data files
Apr 08, 2024 version files 273.93 MB
Abstract
Opioid use in the United States and abroad is an endemic part of society with yearly increases in overdose rates and deaths. As rates of overdose incidence increase, the use of the safe and effective reversal agent, naloxone, in the form of a nasal rescue spray is being fielded and used by emergency medical technicians (EMTs) at a greater and greater rate. Despite advances in the deployment of these rescue products, deaths are continuing to increase. There is evidence that repeated dosing of a naloxone nasal spray (such as Narcan) is becoming more common due to the amount and type of opiate being administered. Despite the benefits of naloxone related to opioid reversals, we lack repeated dosing guidelines as a function of opiates and the amount the patient has taken. Goal-directed rescue dosing, where respiratory markers such as oxygen saturation or end-tidal carbon dioxide, are being used as an indication of the patient's recovery. These rescue methods require time, training, and understanding by the EMT to administer with most patients receiving naloxone doses with no follow-up or additional monitoring. To measure repeat dosing guidelines, we construct a whole-body model of the pharmacokinetics and dynamics of an opiate, fentanyl on respiratory depression. We then construct a model of nasal deposition and administration of naloxone to investigate repeat dosing requirements for large overdose scenarios. We demonstrate that naloxone is highly effective at reversing the respiratory symptoms of the patient and recommend dosing requirements as a function of the fentanyl amount administered. By designing the model to include circulation and respiration we investigate physiological markers that may be used in goal-directed therapy rescue treatments.
README: Whole-body physiology model to simulate respiratory depression of fentanyl and associated naloxone reversal
https://doi.org/10.5061/dryad.3tx95x6pr
Experimental and simulated data to investigate respiratory depression associated with fentanyl overdose and naloxone reversal administration.
Description of the data and file structure
The data, once unzipped is in the following structure:
Data
- Naloxone PK data
/reversal
/RepeatExperiment - Naloxone reversal data (units included in files) with Python notebook to generate figures
- /bolus - Fentanyl bolus data
/Opiod - Experimental fentanyl data, extracted from cited publications and notebook to generate figures
/modelData - Experimental and simulated data for CO2 responses and respiratory depression
- /StepInfusionResults - Figures from a single simulated experiment
Sharing/Access information
The data is also available on GitHub (link in the Related Works section).
Code/Software
All data was generated using the BioGears physiology engine. The HowTo file to generate all reversal scenarios is included in the core engine repository at the GitHub site. All Python notebooks are included in this data to re-create all figures in the manuscript.
Methods
Data was collected via the BioGears physiology engine. Python code used to generate data is included in the zip.