Data from: Characterization of class I- and II-like major histocompatibility complex loci in pedigrees of North Atlantic right whales
Gillett, Roxanne M.
Murray, Brent W.
White, Bradley N.
Published Nov 27, 2013 on Dryad.
Cite this dataset
Gillett, Roxanne M.; Murray, Brent W.; White, Bradley N. (2013). Data from: Characterization of class I- and II-like major histocompatibility complex loci in pedigrees of North Atlantic right whales [Dataset]. Dryad. https://doi.org/10.5061/dryad.4d789
North Atlantic right whales have one of the lowest levels of genetic variation at minisatellite loci, microsatellite loci, and mitochondrial control region haplotypes among mammals. Here, adaptive variation at the peptide binding region of class I and class II DRB-like genes of the major histocompatibility complex was assessed. Amplification of a duplicated region in 222 individuals revealed at least 11 class II alleles. Six alleles were assigned to the locus Eugl-DRB1 and 5 alleles were assigned to the locus Eugl-DRB2 by assessing segregation patterns of alleles from 81 parent/offspring pedigrees. Pedigree analysis indicated that these alleles segregated into 12 distinct haplotypes. Genotyping a smaller subset of unrelated individuals (n = 5 and 10, respectively) using different primer sets revealed at least 2 class II pseudogenes (with ≥ 4 alleles) and at least 3 class I loci (with ≥ 6 alleles). Class II sequences were significantly different from neutrality at peptide binding sites suggesting loci may be under the influence of balancing selection. Trans-species sharing of alleles was apparent for class I and class II sequences. Characterization of class II loci represents the first step in determining the relationship between major histocompatibility complex variability and factors affecting health and reproduction in this species.
Supplementary Material - MHC Class II Nucleotide Alignment
Nucleotide sequences of North Atlantic right whale DRB-like alleles (Accession Numbers: KF137593- KF137605). Alleles are aligned to the cow DRB3, cow DRB2, Human DRB1, Human DQB2, beluga DRB and beluga DQB alleles. The positions of the three primer sets used in this study are also indicated.
Supplementary Material - MHC Haplotypes
North Atlantic right whale EuglDRB1-DRB2 haplotypes identified by following transmission patterns in four known matrilines and six known patrilines.
Supplementary Material - Right Whale Family Groups
Eugl-DRB1 and Eugl-DRB2 genotypes obtained from the 81 assessed North Atlantic right whale family groups used to that were used to infer MHC Class II haplotypes.
Supplementary Material - SSCP Image
Example of SSCP mobility patterns of known North Atlantic right whale DRB-like alleles.