Data from: Feather corticosterone is lower in translocated and historical populations of the endangered Laysan duck (Anas laysanensis)
Data files
Apr 12, 2024 version files 6.67 KB
Abstract
Identifying reliable bioindicators of population status is a central goal of conservation physiology. Physiological stress measures are often used as metrics of individual health and can assist in managing endangered species if linked to fitness traits. We analysed feather corticosterone, a cumulative physiological stress metric, of individuals from historical, translocated, and source populations of an endangered endemic Hawaiian bird, the Laysan duck (Anas laysanensis). We hypothesised that feather corticosterone would reflect the improved reproduction and survival rates observed in populations translocated to Midway and Kure Atolls from Laysan Island. We also predicted less physiological stress in historical Laysan birds collected before ecological conditions deteriorated and the population bottleneck. All hypotheses were supported: we found lower feather corticosterone in the translocated populations and historical samples than in those from recent Laysan samples. This suggests that current Laysan birds are experiencing greater physiological stress than historical Laysan and recently translocated birds. Our initial analysis suggests that feather corticosterone may be an indicator of population status and could be used as a non-invasive physiological monitoring tool for this species with further validation. Furthermore, these preliminary results, combined with published demographic data, suggest that current Laysan conditions may not be optimal for this species.
README: Feather corticosterone is lower in translocated and historical populations of the endangered Laysan duck (Anas laysanensis)
https://doi.org/10.5061/dryad.4tmpg4fjg
Description of the data and file structure
Table S1 - A .csv file containing all of the available information for each feather sample used in the analysis. This is the file from which the statistical analysis is run.
Table S2 - A .csv file containing definitions and descriptions of all the variables included in the dataset.
LADU_Feather_Cort_Analysis (Zenodo)- R Code used to analyze the feather corticosterone concentrations and create the results figure used in the paper.
Sharing/Access information
Also included as supplemental information with the manuscript
Code/Software
To run the analysis, you will need to have R version 4.3.1 or higher installed. R Studio version 20203.6.1.438 or higher is also helpful. Once you open the file, set the working directory to wherever you have stored the CSV data file. You will need the following packages installed to run the code: car, agricolae, ggplot2, ggpubr, wesanderson, tibble. They can be installed using the install.packages() function or found here:
https://cran.r-project.org/web/packages/available_packages_by_name.html#available-packages-C
You should be able to run the code line by line or all at once now. See annotations within the code for more information on each analysis step.