Data from: Swapping birth and death: symmetries and transformations in phylodynamic models
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May 23, 2019 version files 183.49 KB
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                bd-symm_supplementary.pdf
                183.49 KB
Abstract
    Stochastic birth--death models provide the foundation for studying and simulating evolutionary trees in  phylodynamics.  A curious feature of such models is that they exhibit fundamental symmetries when the birth and death rates are interchanged. In this paper, we first provide  intuitive reasons for these known transformational symmetries. We then show that these transformational symmetries (encoded in algebraic identities) are preserved even when individuals  at the present are sampled with some probability. However, these extended symmetries require the death rate  parameter to sometimes take a  negative value. In the last part of this paper, we describe the relevance of these transformations and their application to computational  phylodynamics, particularly to maximum likelihood and Bayesian inference methods, as well as to model selection.
  
  
  
  