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Data from: Awake responses suggest inefficient dense coding in the mouse retina

Boissonnet, Tom1; Tripodi, Matteo1; Asari, Hiroki1

Research facility: European Molecular Biology Laboratory
Published Oct 05, 2023 on Dryad. https://doi.org/10.5061/dryad.5x69p8d52

Data files

Oct 05, 2023 version files 4.88 GB

Abstract

The structure and function of the vertebrate retina have been extensively studied across species with an isolated, ex vivo preparation. Retinal function in vivo, however, remains elusive, especially in awake animals. Here we performed single-unit extracellular recordings in the optic tract of head-fixed mice to compare the output of awake, anesthetized, and ex vivo retinas. While the visual response properties were overall similar across conditions, we found that awake retinal output had in general 1) faster kinetics with less variability in the response latencies; 2) a larger dynamic range; and 3) higher firing activity, by ~20 Hz on average, for both baseline and visually evoked responses. Our modeling analyses further showed that such awake response patterns convey comparable total information but less efficiently, and allow for a linear population decoder to perform significantly better than the anesthetized or ex vivo responses. These results highlight distinct retinal behavior in awake states, in particular suggesting that the retina employs dense coding in vivo, rather than sparse efficient coding as has been often assumed from ex vivo studies.