Dataset of aerial photographs acquired with UAV using a multispectral (Green, Red and Near-infrared) camera for cherry tomato (Solanum lycopersicum var. cerasiforme) monitoring
Data files
Dec 16, 2024 version files 219.86 GB
-
README.md
4.45 KB
-
V1_15_10_2021.zip
44.20 GB
-
V2_24_10_2021.zip
41.24 GB
-
V3_10_11_2021.zip
29.37 GB
-
V4_21_11_2021.zip
27.35 GB
-
V5_03_12_2021.zip
26.32 GB
-
V6_18_12_2021.zip
25.09 GB
-
V7_23_01_2022.zip
26.28 GB
Abstract
A dataset of aerial photographs acquired with an unmanned aerial vehicle (UAV) DJI Phantom 4 Pro is presented for monitoring a cherry tomato (Solanum lycopersicum var. cerasiforme) crop in Navolato, Mexico. Seven photogrammetric flights were carried out to assess the plant growth using a Mapir Survey 3W multispectral camera. Multispectral images with an approximate spatial resolution of 1.83 cm/px were obtained in each photogrammetric flight. These images were acquired every 15 days starting on October 15, 2021, and ending on January 23, 2022. The database contains the radiometrically calibrated images of the tomato crop divided into 2 treatments (repetitions). The dataset also includes the processed photogrammetric products (ortho-mosaics) using a binary mask to exclude the soil from the plant area. The database was originally acquired to assess plant growth, stress levels, and overall crop health. However, this multispectral imagery dataset can also have various uses, such as creating training datasets with accurate labels or classes which can then be used to develop, train, and/or validate machine learning algorithms for image classification, object detection tasks, or change detection analysis
README: Dataset of aerial photographs acquired with UAV using a multispectral (Green Red Near-infrared) camera for cherry tomato (Solanum lycopersicum var. cerasiforme) monitoring
https://doi.org/10.5061/dryad.63xsj3vbd
Description of the data and file structure
Dataset of aerial photographs acquired with UAV using a multispectral (Green, Red and Near-infrared) camera for cherry tomato (Solanum lycopersicum var. cerasiforme) monitoring.
Files and variables
File: Tomatodb
Description: The dataset organization. The folders are organized by flight date. Therefore, a total of seven folders can be found. Each folder contains three subfolders (FLIGHT, ORTHO, and PLANT). The FLIGHT folder contains the multispectral aerial images obtained from the photogrammetric flights. The ORTHO folder contains the orthomosaics obtained from image processing and then when the binary mask was applied. The PLANT folder contains two subfolders, CROP_1 and CROP_2, which show the multispectral images of the leaves and fruits of the crop (T1 and T2, respectively). These images were taken manually at about 50 cm from the plant. These images are compatible with various GIS software packages, but using the free and open-source QGIS is recommended. Table 2 shows the description, format, and size of each file.
Table 2.- Description and size of files
Flight date | File description | Format | File size |
---|---|---|---|
15/10/2021 | 745 calibrated images without removing the initial departure images | TIF | 35.6 GB |
15/10/2021 | 62 calibrated images were taken manually at about 50 cm from the plant | TIF | 2.82 GB |
24/10/2021 | 764 calibrated images without removing the initial departure images | TIF | 33.9 GB |
24/10/2021 | 49 calibrated images were taken manually at about 50 cm from the plant | TIF | 2.03 GB |
10/11/2021 | 492 calibrated images without removing the initial departure images | TIF | 20.5 GB |
10/11/2021 | 87 calibrated images were taken manually at about 50 cm from the plant | TIF | 3.62 GB |
21/11/2021 | 430 calibrated images without removing the initial departure images | TIF | 18.4 GB |
21/11/2021 | 97 calibrated images were taken manually at about 50 cm from the plant | TIF | 4.08 GB |
03/12/2021 | 404 calibrated images without removing the initial departure images | TIF | 18.1 GB |
03/12/2021 | 72 calibrated images were taken manually at about 50 cm from the plant. | TIF | 3.20 GB |
18/12/2021 | 400 calibrated images without removing the initial departure images | TIF | 17.9 GB |
18/12/2021 | 48 calibrated images were taken manually at about 50 cm from the plant. | TIF | 2.07 GB |
23/01/2022 | 420 calibrated images without removing the initial departure images | TIF | 17.5 GB |
23/01/2022 | 81 calibrated images taken manually at about 50 cm from the plant. | TIF | 3.35 GB |
- | 7 orthomosaics without using binary mask | TIF | 22.47 GB |
- | 7 orthomosaics excluding the ground. Image pixels only represent plants. | TIF | 2.65 |
15/10/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 5.45 MB |
24/10/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 5.13 MB |
10/11/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 5.13 MB |
21/11/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 4.46 MB |
03/12/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 6.04 MB |
18/12/2021 | Binary masks of the two treatments (T1 and T2). | TIF | 4.91 MB |
23/01/2022 | Binary masks of the two treatments (T1 and T2). | TIF | 4.76 MB |
Total of dataset | 209 GB |
Methods
Cherry tomato seeds were germinated in a greenhouse and transplanted outdoors on September 6, 2021. Plants were locally managed, and supported with nylon twine to maintain upright growth and prevent breakage from fruit weight. The study used two replicated treatments (T1 and T2) with organic-mineral fertilization; no stress was induced in either treatment.
DJI Phantom 4 Pro UAV was used for the photogrammetric flights. A Mapir Survey 3W multispectral camera was mounted on this UAV to obtain images in the GRN (Green, Red, Near Infrared) spectral range. The DJI GS Pro application was used to define the route (polygon), speed (14.1 m/s), flight height (40 m). The photogrammetric flight parameters were constant for all flights performed. These parameters were set according to the resolution of the multispectral camera sensor system. All photogrammetric flights were performed under nadir conditions. The Mapir Survey 3W camera operated independently of the UAV camera. Its configuration was based on UAV speed and height, resulting in longitudinal and transverse overlaps of 92.8% and 62%, respectively, and a GSD of 1.83 cm/pixel. The dataset is restricted to the Mapir Survey 3W camera imagery.
Images were captured in RAW + JPG format and subsequently underwent radiometric calibration. This involved pre-flight acquisition of a ground target image. Photogrammetric processing, using Mapir Camera Control software and the empirical line method, converted sensor radiation to reflectance via regression analysis against known ground target reflectance values. The resulting 12-bit TIF images (Table 1 details flight conditions) have a radiometric resolution of 12 bits and the following channel order: Channel 1 (red), Channel 2 (green), and Channel 3 (near-infrared). These calibrated images constitute the dataset. Phenological stage (BBCH scale) observations are also provided. The first flight occurred 15 days post-transplantation from greenhouse to field.
Table 1.- Photogrammetric flight logs
Flight |
Date |
Hour |
Weather conditions |
Temperature in °C |
Humidity Relative |
BBCH scale |
Notes |
V1 |
15/10/2021 |
8:00 AM |
Sunny |
23.5 |
70% |
20-29 |
The plant is developing foliage |
V2 |
24/10/2021 |
8:00 AM |
Sunny |
22.3 |
81% |
50-59 |
The plant starts to produce flowers. |
V3 |
10/11/2021 |
8:00 AM |
Sunny |
20.2 |
68% |
60-69 |
The development of fruit is observed |
V4 |
21/11/2021 |
7:30 AM |
Sunny |
19.5 |
67% |
70-79 |
The plant is a fruit-bearing crop |
V5 |
03/12/2021 |
11:15 AM |
Sunny |
28.5 |
57% |
70-79 |
The maturation of some tomatoes is observed. The size and color of the fruit continue to develop. |
V6 |
18/12/2021 |
8:30 AM |
Sunny |
19.8 |
69% |
80-89 |
Most of the tomatoes are fully mature and ready for harvest. |
V7 |
23/01/2022 |
9:00 AM |
Moderate cloud cover |
18.5 |
63% |
90-99 |
The plant begins to deteriorate. Leaves start turning yellow. |