Data from: RADseq resolves the Hawaiian Island radiation of Myrsine L. (Primulaceae) and provides evidence for hybridization
Cite this dataset
Appelhans, Marc; Paetzold, Claudia; Wood, Kenneth; Wagner, Warren (2020). Data from: RADseq resolves the Hawaiian Island radiation of Myrsine L. (Primulaceae) and provides evidence for hybridization [Dataset]. Dryad. https://doi.org/10.5061/dryad.6wwpzgmvs
Abstract
Methods
The dataset consists of Sanger (ITS, ETS) sequences and RADseq data. For the Sanger datasets, alignments are provided. The RADseq data has been processed with ipyrad 0.7.28 and de-multiplexed raw reads have been deposited at SRA (https://www.ncbi.nlm.nih.gov/sra; BioProject number PRJNA614459).
For the RADseq dataset, phylogenetic trees are provided, which have been calculated using ExaBayes 1.5 and RAxML 8.2.4. We also tested for phylogenetic incongruence and signs of hybridization in our datasets using Quartet Sampling v.1.2.1 and HyDe v.0.4.3. Phylogenetic trees with Quartet Sampling results and tables with the HyDe results are included here.