The Andes of Colombia and Ecuador as a barrier to fern and lycophyte species from Mesoamerica
Data files
Jan 09, 2025 version files 1.17 MB
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PolygonA.zip
37.69 KB
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PolygonB.zip
28.84 KB
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PolygonC.zip
20.67 KB
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PolygonsABC.zip
100.58 KB
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README.md
2.26 KB
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SpeciesListPolygonsABC.csv
79.67 KB
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total_species_calculation_Morris___Moran_2024.R
10.44 KB
Abstract
We compiled a list of the fern and lycophyte species that occur in Mesoamerica and extend into Colombia and Ecuador where they are restricted to the western side of the Andes; that is, they only occur west of the crest of the easternmost cordillera and are absent from that cordillera’s eastern slope and in adjacent Amazonia. We found 130 species with this Mesoamerican and west-of-the-eastern-cordillera distribution. Those 130 species constitute 7% of the total 1805 fern and lycophyte species that have been recorded west of the crest of the easternmost cordillera in Colombia and Ecuador. All 130 species had elevation ranges with midpoints lying in low (0–900 m) or middle (900–3000 m) elevations, and none were above 3000 m. This suggests the cordilleras have acted as elevational barriers. We also investigated the blockage of these 130 species by each of the Andean cordilleras. We found that 74 (57%) of the 130 species were limited eastward by the western cordillera, 15 (11%) by the central cordillera (this cordillera in Colombia only), and 41 (32%) by the eastern cordillera. If estimates of endemics to the western Andean region are considered, then at least 20–22% of all fern and lycophyte species are restricted west of the crest of the easternmost cordillera. Although usually exhibiting larger geographic distributions compared to angiosperms, fern and lycophyte species may show significant geographic restriction by mountain ranges.
README: The Andes of Colombia and Ecuador as a barrier to fern and lycophyte species from Mesoamerica
https://doi.org/10.5061/dryad.79cnp5j3v
In this repository are the zipped shapefiles, custom R-script and species lists related to Morris & Moran 2024.
available files:
• Zipped shapefiles for Regions A, B, and C of Colombia and Ecuador
• R script used to calculate the total number of fern and lycophyte species in Regions A, B, and C
• Cleaned list of species present in Regions A, B, and C of Colombia and Ecuador as a .csv
Description
total_species_calculation_Morris__Moran_2024.R
- The R script is linked to the shapefiles.
- The R script takes a downloaded occurrence dataset from GBIF , cleans the records, and subsets the occurrences using the shapefiles.
- The working directory in R should contain the shapefiles for the script to work properly.
Polygons A, B, C, and ABC
- Each zipped file contains the shapefile for that polygon.
- This can be used in mapping softwares such as ArcGIS or can be referenced in an R-script, as it was used for this project.
- The shapefile folders should be in the same directory as the R script in order for the R script to work properly.
- The regions correspond to the regions illustrated in Figure 1 of the publication. Polygon ABC is all three regions combined into 1 polygon.
SpeciesListPolygonsABC.csv
- This .csv file contains the names of all 1775 species found in regions A, B or C from GBIF records (see Figure 1) after cleaning.
- These names have been curated and confirmed by taxonomic experts, including the authors of the publication.
- The CollectionCount column is the number of occurrences for each taxon, after cleaning.
- Column D summarizes the total number of fern species and lycophyte species found in the region, including the 30 species not in GBIF but known (via herbarium specimens) to occur in the region.
Sharing/Access information
Data is available here without restrictions
Code/Software
Analyses of the occurrence records were done in R version 4.3.2
shapefiles were created using ESRI ArcGIS Pro version 3.2.2