Diet of Curruca melanocephala in north Portugal

Velarde-Garcéz, Daniel1 ; Mata, Vanessa1 ; Beja, Pedro1 ; da Silva, Luis1

Published Jan 02, 2024 on Dryad. https://doi.org/10.5061/dryad.7h44j100g

Data files

Jan 02, 2024 version files 8.16 MB

Curruca.melanocephala.sequencing.data.zip

7.88 MB
README.md

2.23 KB
SM.xlsx

273.68 KB

Abstract

Metadata of foraging interaction between Sardinian Warblers and animal and plant prey items in north Portugal. Data was obtained through DNA metabarcoding analysis using the primers FwhF2-R2n and UniPlantF-R. Contains the diet of 234 individuals sampled across 12 months and four sites. It includes the code to replicate the methods described in the article "DNA metabarcoding, diversity partitioning and null models reveal mechanisms of seasonal trophic specialisation in a Mediterranean warbler" currently in the process of publishing.

README: Diet of Curruca melanocephala in north Portugal

Description: Metadata of foraging interaction between Sardinian Warblers and animal and plant prey items in north Portugal. Data was obtained
through DNA metabarcoding analysis using the primers FwhF2-R2n and UniPlantF-R. Contains the diet of 234 individuals sampled across 12
months and four sites. Each row belongs to an interaction between one sample and a haplotype (prey item). It includes the code to replicate the methods described in the article "DNA metabarcoding, diversity partitioning and null models reveal mechanisms of seasonal trophic specialisation in a Mediterranean warbler" published in Molecular Ecology (2023). Required software: R.

Cite as:

[dataset] Velarde-Garcéz, D., Mata, V. A., Beja, P., & Silva, L. P. (2023). Data from: DNA metabarcoding, diversity partitioning and null models reveal mechanisms of seasonal trophic specialisation in a Mediterranean warbler. Dryad Digital Repository. https://doi.org/10.5061/dryad.7h44j100g

Columns:

primerset: name of primer
seq: nucletotide sequence of the identified haplotype
seq.len: number of nucleotides in the sequence
sample: sample code
clean.reads: number of reads after filtering of the haplotype in the sample
kingdom: kingdom identification according to BOLD
phylum: phylum identification according to BOLD
class: class identification according to BOLD
order: order identification according to BOLD
family: family identification according to BOLD
genus: genus identification according to BOLD
species: species identification according to BOLD
id.level: lowest taxonomic level obtained in the identification.
match.bold: percentage of the match according to BOLD.
match.ncbi: percentage of the match according to ncbi.
otu.id: Operational Taxonomic Unitd ID
date: Date of the sample collection
month.cat: Month category of the sample collection
C/R: Capture or Recapture
ring: Code of the individual
age.ca: Category of age (1cy: first year birds; 2cy+ second year birds or older)
sex: sex (M: male; F: female; unk: unknown)
site: Locality were the sample was collected.
interaction: sample and OTU