Data from: All is fish that comes to the net: metabarcoding for rapid fisheries catch assessment
Cite this dataset
Talarico, Lorenzo et al. (2020). Data from: All is fish that comes to the net: metabarcoding for rapid fisheries catch assessment [Dataset]. Dryad. https://doi.org/10.5061/dryad.7m0cfxpsh
Abstract
Usage notes
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COI_R1.fastq and COI_R2.fastq: COI paired-end FastQ files from the Illumina HiSeq 2x250 bp run.
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COI_tag&primers.txt: COI primers and unique dual-tag combinations (forward and reverse) for 63 COI amplicons (54 slush samples, 2 extraction blanks, 1 PCR negative control, 6 seawater blanks).
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12S_R1.fastq and 12S_R2.fastq: 12S paired-end FastQ files from the Illumina MiSeq 2x150 bp run.
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12S_tag&primers.txt: 12S primers and unique dual-tag combinations (forward and reverse) for 63 12S amplicons (54 slush samples, 2 extraction blanks, 1 PCR negative control, 6 seawater blanks).
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metabarcoding_COI_data.xlsx: number of reads per species/replicate/site after data post-processing and cleaning. Data refer to analyzed taxa: teleosts, elasmobranchs, cephalopods and decapods.
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metabarcoding_12S_data.xlsx: number of reads per species/replicate/site after data post-processing and cleaning. Data refer to analyzed taxa: teleosts and elasmobranchs.
Funding
Natural Environment Research Council, Award: NE/N005759/1
Ministry of Agricultural, Food and Forestry Policies, Award: Italian Program for the Data Collection in the Fisheries Sector