Phylogenetic insights into Canidae trait variation across continents
Data files
Jul 20, 2023 version files 12.10 MB
-
phylogeny.new
1.61 KB
-
README.md
2.10 KB
-
shapes.zip
11.95 MB
-
Tmean_per_Sites.txt
146.44 KB
-
traits.txt
2.27 KB
Jul 20, 2023 version files 12.10 MB
Abstract
Aim
Understanding the spatial structuring of ecological communities involves considering the interplay between evolutionary history and environmental factors. This study investigates how the phylogenetic structure of Canidae influences the geographical distribution and trait patterns of lineages globally, and how these patterns relate to Bergmann's and Rapoport's rules.
Location
Americas, Africa, Eurasia.
Time period
12 million years ago – present.
Major taxa studied
Canidae.
Methods
Using distribution data and phylogenetic information for 37 Canidae species, we analyzed key ecological, functional, and evolutionary variables. We applied phylogenetic fuzzy-weighting via Principal Coordinates of Phylogenetic Structure (PCPS) and variance partitioning analysis (VPA) to assess the contributions of phylogenetic structure and environmental factors to trait variation among species.
Results
Our results revealed distinct global patterns in body size, body weight, range size, habitat use, and evolutionary distinctiveness among lineages. We also identified the shared contributions of phylogenetic structure and temperature to trait variation using variance partitioning analysis. The PCPS axes highlighted the influence of phylogenetic relationships on Canidae assemblages, particularly in South America.
Main conclusions
Importantly, the study challenges the applicability of Bergmann's and Rapoport's rules across continents. The unique diversification history of Canidae in South America and Africa and their diverse environmental conditions likely contribute to the observed trait patterns that make both continents so distinguished when compared to North America and Eurasia. Our findings underscore the need to incorporate phylogenetic information in models assessing trait variation across geographic scales for unbiased estimates.
README: Phylogenetic insights into Canidae trait variation across continents
The files available here can be used to map, using phylogenetic fuzzy-weighting, the distribution of phylogenetic information of canids across the globe, together with their traits.
Description of the data and file structure
- phylogeny.new (phylogenetic tree with 37 species of Canidae used in our study derived from Porto et. al., (2019))
- Tmean_per_Sites.txt (Information on mean annual temperature across all the grid cells used in our study)
- traits.txt (Species trait values used in our study)
- Diet - values of 1, 2, and 3 to hipo-, meso-, and hypercarnivory species, respectively
- Group_behav - values of 0, 1, and 2 to species with low, medium, high social behaviors, respectively
- Size_cm - species sizes in centimeters
- Mass_kg - species body weights in kilograms
- Habitat - percentage of vegetation cover (from 0 to 100) in the grid cells in which species are distributed
- Range_npixels - number of grid cells that species are distributed (a proxy for species range sizes)
- Evol_distinc - value of evolutionary distinctiveness among canids based on their phylogenetic relationships
- shapes.zip (Combined shape files of all the 37 canids used during your analysis)
Sharing/Access information
Data was derived from the following sources:
- Porto, L. M. V., R. Maestri, and L. D. S. Duarte. 2019. Evolutionary relationships among life-history traits in Caninae (Mammalia: Carnivora). Biol. J. Linn. Soc., doi: 10.1093/biolinnean/blz069.
- IUCN - IUCN. 2020. The IUCN Red List of Threatened Species.
- PanTHERIA - Jones, K. E., J. Bielby, M. Cardillo, S. A. Fritz, J. O’Dell, C. D. L. Orme, K. Safi, W. Sechrest, E. H. Boakes, C. Carbone, C. Connolly, M. J. Cutts, J. K. Foster, R. Grenyer, M. Habib, C. A. Plaster, S. A. Price, E. A. Rigby, J. Rist, A. Teacher, O. R. P. Bininda-Emonds, J. L. Gittleman, G. M. Mace, and A. Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648–2648.