A broadly resolved molecular phylogeny of New Zealand cheilostome bryozoans as a framework for hypotheses of morphological evolution
Data files
Apr 30, 2021 version files 28.07 MB
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18s_ML.newick
18.62 KB
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28s_ML.newick
15.46 KB
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Adeonellopsis_gemina_BLEED1364.gbk
25.28 KB
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Aetea_sp_BLEED601.gbk
39.20 KB
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Aimulosia_marsupium_BLEED1305.gbk
33.65 KB
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Aimulosia_marsupium_BLEED600.gbk
33.45 KB
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Akatopora_circumsaepta_BLEED1670_A.gbk
19.64 KB
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Akatopora_circumsaepta_BLEED1670_B.gbk
8.15 KB
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Akatopora_circumsaepta_BLEED1670_C.gbk
3.04 KB
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Akatopora_circumsaepta_BLEED1670_D.gbk
9.22 KB
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Akatopora_circumsaepta_BLEED1670_E.gbk
8.15 KB
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Akatopora_circumsaepta_BLEED1670_F.gbk
3.40 KB
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Amastigia_funiculata_BLEED650.gbk
37.32 KB
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Amastigia_harmeri_BLEED1394.gbk
38.94 KB
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Amphiblestrum_blandum_BLEED641.gbk
15.89 KB
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Amphiblestrum_blandum_BLEED682.gbk
14.96 KB
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Amphiblestrum_contentum_BLEED1318.gbk
9.70 KB
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Amphiblestrum_n_sp1_BLEED1294.gbk
31.79 KB
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Amphiblestrum_n_sp2_BLEED1395.gbk
10.55 KB
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Antarctothoa_delta_BLEED703.gbk
31.19 KB
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Arachnopusia_unicornis_BLEED183.gbk
21.72 KB
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Arachnopusia_unicornis_BLEED221.gbk
15.20 KB
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Arthropoma_cecilii_BLEED177.gbk
26.09 KB
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atp6_ML.newick
19.71 KB
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atp8_ML.newick
9.49 KB
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Beania_bilaminata_BLEED699.gbk
39.12 KB
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Beania_elongata_BLEED702.gbk
30.24 KB
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Beania_plurispinosa_BLEED203.gbk
43.83 KB
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Beania_serrata_BLEED1625.gbk
34.76 KB
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Beania_sp_BLEED1333.gbk
42.47 KB
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Beania_stonycha_BLEED84.gbk
33.20 KB
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Bitectipora_cincia_BLEED801.gbk
31.64 KB
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Bitectipora_mucronifera_BLEED1380.gbk
31.36 KB
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Bitectipora_retepora_BLEED180.gbk
30.82 KB
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Buffonellaria_biavicularis_BLEED189.gbk
32.15 KB
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Buffonellaria_cf_regenerata_BLEED88.gbk
31.44 KB
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Caberea_aff_rostrata_BLEED1649_A.gbk
29.09 KB
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Caberea_aff_rostrata_BLEED1649_B.gbk
7.17 KB
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Caberea_angusta_BLEED160_A.gbk
29.92 KB
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Caberea_angusta_BLEED160_B.gbk
7.49 KB
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Caberea_rostrata_BLEED1260.gbk
33.58 KB
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Caberea_zelandica_BLEED648.gbk
28 KB
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Caleschara_minuta_BLEED1266.gbk
52.11 KB
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Caleschara_minuta_BLEED1695.gbk
52.15 KB
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Calloporina_angustipora_BLEED793.gbk
36.60 KB
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Calloporina_triporosa_BLEED1334.gbk
30.51 KB
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Canda_filifera_BLEED1376.gbk
34.92 KB
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Canda_filifera_BLEED608.gbk
34.05 KB
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Catenicella_pseudoelegans_BLEED788.gbk
31.38 KB
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Catenicella_sp_BLEED1699.gbk
37.54 KB
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Cellaria_immersa_BLEED1631.gbk
33.73 KB
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Cellaria_immersa_BLEED167.gbk
41.60 KB
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Celleporaria_agglutinans_BLEED657_A.gbk
8.46 KB
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Celleporaria_agglutinans_BLEED657_B.gbk
6.04 KB
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Celleporaria_cf_tridenticulata_BLEED1379.gbk
30.76 KB
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Celleporaria_macrodon_BLEED1630.gbk
30.15 KB
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Celleporina_cf_cribrillifera_BLEED1328.gbk
37.21 KB
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Celleporina_n_sp_BLEED681.gbk
30.22 KB
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Celleporina_sinuata_BLEED328.gbk
37.76 KB
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Chaperia_n_sp1_BLEED200.gbk
36.38 KB
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Chaperiopsis_aff_cervicornis_BLEED316.gbk
36.61 KB
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Chaperiopsis_aff_cervicornis_BLEED800.gbk
31.18 KB
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Chaperiopsis_aff_rubida_BLEED1658.gbk
35.90 KB
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Chaperiopsis_cf_rubida_BLEED1324.gbk
37.69 KB
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Chaperiopsis_n_sp_BLEED1616.gbk
35.56 KB
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Chiastosella_enigma_BLEED54.gbk
31.52 KB
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Chiastosella_enigma_BLEED626.gbk
37.16 KB
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Chiastosella_jellyae_BLEED1626.gbk
38.34 KB
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Chiastosella_longaevitas_BLEED1299.gbk
35.60 KB
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Chiastosella_longaevitas_BLEED1351.gbk
33.09 KB
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Chiastosella_longaevitas_BLEED1367.gbk
36.92 KB
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Chiastosella_splendida_BLEED53.gbk
32.76 KB
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Chiastosella_watersi_BLEED154.gbk
37.86 KB
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Chiastosella_watersi_BLEED56.gbk
31.88 KB
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cob_ML.newick
20.64 KB
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Cornucopina_n_sp_BLEED168.gbk
40.28 KB
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Cornucopina_sp_BLEED1673.gbk
34.42 KB
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Cornuticella_taurina_BLEED199.gbk
31.89 KB
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Cornuticella_trapezoidea_BLEED1687.gbk
32.33 KB
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Cosciniopsis_vallata_BLEED202.gbk
32.02 KB
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Costaticella_bicuspis_BLEED103.gbk
46.55 KB
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Costaticella_bicuspis_BLEED647.gbk
14.47 KB
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cox1_ML.newick
21.23 KB
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cox2_ML.newick
19.98 KB
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cox3_ML.newick
20.31 KB
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Crassimarginatella_cucullata_BLEED674.gbk
38.13 KB
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Crateropora_styliformis_BLEED320.gbk
24.72 KB
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Crepidacantha_crinispina_BLEED1264.gbk
37.13 KB
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Crepidacantha_crinispina_BLEED1265.gbk
37.18 KB
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Crepidacantha_crinispina_BLEED662.gbk
33.62 KB
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Crepidacantha_kirkpatricki_BLEED1676.gbk
38.98 KB
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Crepidacantha_zelanica_BLEED1119.gbk
40.44 KB
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Crepidacantha_zelanica_BLEED1319.gbk
40.93 KB
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Cribellopora_napi_BLEED675.gbk
35.91 KB
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Cyclicopora_aff_praelonga_BLEED1155.gbk
32.73 KB
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Dimetopia_barbata_BLEED652.gbk
37.66 KB
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Dimetopia_cornuta_BLEED1354.gbk
34.35 KB
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Drepanophora_biperforata_BLEED1357.gbk
31.77 KB
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Electra_scuticifera_BLEED98.gbk
35.50 KB
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Ellisina_sericea_BLEED697.gbk
31.08 KB
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Emma_triangula_BLEED1348_A.gbk
18.04 KB
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Emma_triangula_BLEED1348_B.gbk
9.90 KB
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Emma_tricellata_BLEED196.gbk
34.56 KB
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Escharoides_angela_BLEED636.gbk
32.46 KB
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Escharoides_cf_excavata_BLEED1275.gbk
32.30 KB
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Escharoides_cf_excavata_BLEED59.gbk
32.04 KB
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Euplozoum_n_sp_BLEED322.gbk
34.50 KB
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Eurystomella_aupouria_BLEED319.gbk
31.87 KB
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Eurystomella_biperforata_BLEED336.gbk
31.97 KB
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Eurystomella_foraminigera_BLEED135.gbk
31.88 KB
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Euthyroides_episcopalis_BLEED651.gbk
33.63 KB
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Euthyroides_n_sp_BLEED1344.gbk
36.45 KB
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Exochella_armata_BLEED713.gbk
35.15 KB
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Exochella_cf_tricuspis_BLEED1665.gbk
30.83 KB
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Exochella_jullieni_BLEED231.gbk
37.32 KB
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Fenestrulina_cf_disjuncta_BLEED708.gbk
31.87 KB
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Fenestrulina_n_sp1_BLEED237.gbk
37.14 KB
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Fenestrulina_n_sp2_BLEED1115.gbk
32.52 KB
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Fenestrulina_reticulata_BLEED1120.gbk
33.92 KB
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Figularia_mernae_BLEED179.gbk
34.31 KB
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Foveolaria_sp_BLEED85.gbk
18.43 KB
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Fovoporella_spectabilis_BLEED673.gbk
30.17 KB
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Galeopsis_n_sp1_BLEED1617.gbk
37.58 KB
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Galeopsis_n_sp2_BLEED1618.gbk
30.71 KB
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Galeopsis_polyporus_BLEED590.gbk
31.88 KB
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Galeopsis_porcellanicus_BLEED591.gbk
30.25 KB
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Gigantopora_pupa_BLEED1335.gbk
35.52 KB
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GLOBAL_18s.fas
462.75 KB
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GLOBAL_18s.fas-gb
432.07 KB
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GLOBAL_28s.fas
1.10 MB
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GLOBAL_28s.fas-gb
690.04 KB
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GLOBAL_atp6.fas
50.79 KB
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GLOBAL_atp6.fas-gb
42.56 KB
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GLOBAL_atp8.fas
7.50 KB
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GLOBAL_atp8.fas-gb
5.50 KB
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GLOBAL_Bayes.newick
151.88 KB
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GLOBAL_CONCAT.nex
2.56 MB
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GLOBAL_cox1.fas
139.27 KB
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GLOBAL_cox1.fas-gb
138.75 KB
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GLOBAL_cox2.fas
64.41 KB
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GLOBAL_cox2.fas-gb
59.26 KB
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GLOBAL_cox3.fas
75.15 KB
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GLOBAL_cox3.fas-gb
68.65 KB
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GLOBAL_cytb.fas
97.43 KB
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GLOBAL_cytb.fas-gb
92.35 KB
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GLOBAL_mitogenome.nex
1.11 MB
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GLOBAL_ML.newick
21.88 KB
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GLOBAL_nad1.fas
83.20 KB
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GLOBAL_nad1.fas-gb
70.61 KB
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GLOBAL_nad2.fas
95.66 KB
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GLOBAL_nad2.fas-gb
54.02 KB
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GLOBAL_nad3.fas
29.56 KB
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GLOBAL_nad3.fas-gb
25.74 KB
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GLOBAL_nad4.fas
117.33 KB
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GLOBAL_nad4.fas-gb
80.06 KB
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GLOBAL_nad4l.fas
28.14 KB
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GLOBAL_nad4l.fas-gb
23.73 KB
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GLOBAL_nad5.fas
146.38 KB
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GLOBAL_nad5.fas-gb
113.93 KB
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GLOBAL_nad6.fas
89.33 KB
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GLOBAL_nad6.fas-gb
27.43 KB
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GLOBAL_rDNA.nex
1.31 MB
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GLOBAL_rrnL.fas
493.61 KB
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GLOBAL_rrnL.fas-gb
184.92 KB
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GLOBAL_rrnS.fas
467.71 KB
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GLOBAL_rrnS.fas-gb
125.85 KB
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Hemismittoidea_hexaspinosa_BLEED619.gbk
31.05 KB
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Hincksina_n_sp_BLEED1252.gbk
32.02 KB
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Hincksina_n_sp_BLEED61.gbk
32.85 KB
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Hippellozoon_novaezelandiae_BLEED1639.gbk
30.98 KB
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Hippomenella_cf_vellicata_BLEED1389_A.gbk
15.81 KB
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Hippomenella_cf_vellicata_BLEED1389_B.gbk
15.41 KB
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Hippomenella_cf_vellicata_BLEED92.gbk
39.68 KB
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Hippomenella_n_sp_BLEED1640.gbk
30.68 KB
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Hippomenella_vellicata_BLEED597.gbk
30.99 KB
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Hippothoa_watersi_BLEED1316.gbk
35.97 KB
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Icong_mitogenome_70%.nex
921.87 KB
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Icong_mt.newick
16.94 KB
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Icong_rDNA_70%.nex
1.20 MB
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Icong_rDNA.newick
16.94 KB
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Inversiula_fertilis_BLEED1393.gbk
32.16 KB
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Inversiula_fertilis_BLEED1668.gbk
38.05 KB
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Iodictyum_yaldwynii_BLEED1387.gbk
33.58 KB
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Macropora_grandis_BLEED1293.gbk
31.86 KB
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Macropora_grandis_BLEED1315.gbk
31.92 KB
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Macropora_levinseni_BLEED1298.gbk
32.22 KB
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Macropora_nodulosa_BLEED1134.gbk
31.56 KB
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Macropora_nodulosa_BLEED124.gbk
31.74 KB
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Macropora_nodulosa_BLEED676.gbk
37.08 KB
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Malakosaria_sinclairii_BLEED1685.gbk
32.50 KB
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Margaretta_barbata_BLEED318.gbk
38.75 KB
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Menipea_n_sp1_BLEED1340.gbk
35.08 KB
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Menipea_n_sp2_BLEED1672.gbk
36.13 KB
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Menipea_vectifera_BLEED89.gbk
40.50 KB
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Metroperiella_n_sp_BLEED1666.gbk
32.01 KB
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Micropora_n_sp1_BLEED607.gbk
36.43 KB
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Micropora_n_sp2_BLEED1663.gbk
45.58 KB
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Micropora_n_sp2_BLEED187.gbk
46.30 KB
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Micropora_n_sp3_BLEED1662.gbk
37.44 KB
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Micropora_n_sp4_BLEED192.gbk
40.32 KB
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Microporella_aff_diademata_BLEED77.gbk
30.67 KB
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Microporella_cf_agonistes_BLEED1114.gbk
29.43 KB
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Microporella_cf_agonistes_BLEED1144_A.gbk
14.10 KB
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Microporella_cf_agonistes_BLEED1144_B.gbk
6.49 KB
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Microporella_cf_agonistes_BLEED75.gbk
30.41 KB
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Microporella_cf_intermedia_BLEED1330.gbk
30.23 KB
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Microporella_cf_intermedia_BLEED66.gbk
30.40 KB
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Microporella_discors_BLEED5.gbk
31.38 KB
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Microporella_n_sp_BLEED709.gbk
29.62 KB
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Microporella_ordo_BLEED101.gbk
29.97 KB
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Microporella_ordo_BLEED64.gbk
33.72 KB
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Microporella_ordo_BLEED71.gbk
30.03 KB
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Microporella_sp_1_BLEED151.gbk
29.45 KB
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mitogenome.newick
21.07 KB
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Mobunula_bicuspis_BLEED1287.gbk
31.99 KB
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Monoporella_n_sp_BLEED1360.gbk
37.37 KB
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Monoporella_n_sp_BLEED1690.gbk
31.31 KB
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Mucropetraliella_vultur_BLEED1362.gbk
31.25 KB
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nad1_ML.newick
19.72 KB
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nad2_ML.newick
18.78 KB
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nad3_ML.newick
16.39 KB
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nad4_ML.newick
19.75 KB
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nad4l_ML.newick
19.94 KB
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nad5_ML.newick
19.98 KB
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nad6_ML.newick
19.42 KB
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NZ_18s.fas
386.78 KB
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NZ_18s.fas-gb
367.86 KB
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NZ_28s.fas
935.35 KB
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NZ_28s.fas-gb
600.79 KB
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NZ_atp6.fas
43.95 KB
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NZ_atp6.fas-gb
38.17 KB
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NZ_atp8.fas
6.24 KB
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NZ_atp8.fas-gb
4.56 KB
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NZ_Bayes.newick
129.52 KB
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NZ_CONCAT.nex
2.22 MB
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NZ_cox1.fas
119.47 KB
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NZ_cox1.fas-gb
119.02 KB
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NZ_cox2.fas
55.38 KB
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NZ_cox2.fas-gb
52.36 KB
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NZ_cox3.fas
63.05 KB
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NZ_cox3.fas-gb
60.25 KB
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NZ_cytb.fas
83.57 KB
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NZ_cytb.fas-gb
79.21 KB
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NZ_ML.newick
18.70 KB
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NZ_nad1.fas
71.20 KB
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NZ_nad1.fas-gb
66.09 KB
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NZ_nad2.fas
81.47 KB
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NZ_nad2.fas-gb
48.71 KB
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NZ_nad3.fas
25.26 KB
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NZ_nad3.fas-gb
22.28 KB
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NZ_nad4.fas
101.64 KB
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NZ_nad4.fas-gb
73.43 KB
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NZ_nad4l.fas
23.84 KB
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NZ_nad4l.fas-gb
23.19 KB
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NZ_nad5.fas
121.92 KB
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NZ_nad5.fas-gb
101.83 KB
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NZ_nad6.fas
69.27 KB
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NZ_nad6.fas-gb
25.38 KB
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NZ_rrnL.fas
386.96 KB
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NZ_rrnL.fas-gb
162.62 KB
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NZ_rrnS.fas
352.38 KB
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NZ_rrnS.fas-gb
111.74 KB
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Odontionella_n_sp_BLEED1382.gbk
26.19 KB
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Opaeophora_lepida_BLEED218.gbk
13.26 KB
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Opaeophora_n_sp_BLEED1157.gbk
14.15 KB
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Orthoscuticella_innominata_BLEED201.gbk
37.12 KB
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Orthoscuticella_ventricosa_BLEED1623.gbk
29.30 KB
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Osthimosia_cf_avicularis_BLEED1141.gbk
29.93 KB
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Osthimosia_cf_avicularis_BLEED134.gbk
29.94 KB
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Osthimosia_n_sp_BLEED1635.gbk
37.30 KB
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Paracribricellina_cribraria_BLEED1693.gbk
30.88 KB
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Parasmittina_aotea_BLEED663.gbk
31.11 KB
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Parasmittina_aotea_BLEED86.gbk
37.11 KB
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Parasmittina_aotea_BLEED948.gbk
31.13 KB
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Parasmittina_delicatula_BLEED191.gbk
33.74 KB
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Parasmittina_solenosmilioides_BLEED1267.gbk
35.95 KB
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Parkermavella_punctigera_BLEED1317.gbk
33.25 KB
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Parkermavella_punctigera_BLEED661.gbk
32.81 KB
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Patsyella_acanthodes_BLEED131.gbk
23.80 KB
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Patsyella_n_sp_BLEED1346.gbk
51.52 KB
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Phidolopora_avicularis_BLEED1374.gbk
36.51 KB
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Phidolopora_avicularis_BLEED1381.gbk
30.82 KB
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Phidolopora_avicularis_BLEED1615.gbk
30.82 KB
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Phonicosia_n_sp1_BLEED1329.gbk
32.79 KB
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Phonicosia_n_sp2_BLEED594.gbk
34.56 KB
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Phonicosia_n_sp2_BLEED671.gbk
36.42 KB
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Powellitheca_n_sp_BLEED1689.gbk
32.28 KB
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Powellitheca_n_sp_BLEED1698.gbk
32.28 KB
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Powellitheca_terraenovae_BLEED1389.gbk
38.57 KB
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Prenantia_firmata_BLEED626.gbk
37.33 KB
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Pterocella_scutella_BLEED104.gbk
30.42 KB
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Pterocella_vesiculosa_BLEED105.gbk
32.01 KB
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Pterocella_vesiculosa_BLEED181.gbk
32.01 KB
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Pterocella_vesiculosa_BLEED810.gbk
32.01 KB
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rDNA.newick
19.02 KB
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README.txt
2.21 KB
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Reciprocus_regalis_BLEED1290.gbk
32.64 KB
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Retevirgula_aggregata_BLEED1349.gbk
44.86 KB
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Rhabdozoum_wilsoni_BLEED695.gbk
36.58 KB
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Rhynchozoon_angulatum_BLEED694.gbk
31.18 KB
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Rhynchozoon_n_sp_BLEED1262.gbk
32.18 KB
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Rhynchozoon_n_sp_BLEED1311.gbk
32.16 KB
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Rhynchozoon_paa_BLEED1694.gbk
30.68 KB
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Rhynchozoon_zealandicum_BLEED127.gbk
30.82 KB
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rrnL_ML.newick
18.63 KB
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rrnS_ML.newick
17.84 KB
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Schizomavella_aotearoa_BLEED1112.gbk
34.01 KB
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Schizosmittina_cinctipora_BLEED700.gbk
32.06 KB
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Schizosmittina_melanobater_BLEED666.gbk
31.82 KB
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Smittina_purpurea_BLEED1398.gbk
37.64 KB
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Smittina_rosacea_BLEED1700.gbk
37.37 KB
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Smittoidea_maunganuiensis_BLEED223.gbk
31.65 KB
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Smittoidea_n_sp_BLEED1677.gbk
32.23 KB
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Smittoidea_n_sp_BLEED691.gbk
32.45 KB
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Steginocellaria_magnimandibulata_331.gbk
33.49 KB
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Steginoporella_discors_BLEED100.gbk
30.18 KB
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Steginoporella_discors_BLEED31.gbk
25.54 KB
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Steginoporella_magnifica_BLEED1323.gbk
30.91 KB
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Steginoporella_marcusi_BLEED1652.gbk
30.40 KB
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Steginoporella_neozelanica_BLEED1628.gbk
30.28 KB
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Steginoporella_perplexa_BLEED1651.gbk
30.65 KB
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Stephanollona_aff_scintillans_BLEED679.gbk
35.26 KB
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Stephanollona_scintillans_BLEED170.gbk
9.24 KB
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Talivittaticella_problematica_BLEED324.gbk
30.28 KB
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Taylorus_arcuatus_BLEED37.gbk
29.95 KB
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Terminocella_n_sp_BLEED194.gbk
28.90 KB
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Valdemunitella_cf_fraudatrix_BLEED1144.gbk
38.32 KB
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Valdemunitella_huttoni_BLEED1158.gbk
32.15 KB
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Valdemunitella_huttoni_BLEED195.gbk
32.97 KB
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Valdemunitella_n_sp_BLEED1653.gbk
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Valdemunitella_n_sp_BLEED1679.gbk
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Valdemunitella_pyrula_BLEED1156.gbk
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Xenogma_rhomboidale_BLEED1115.gbk
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Yrbozoon_conspicuum_BLEED1279.gbk
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Abstract
Larger and larger molecular phylogenies based on ever more genes are becoming commonplace with the advent of cheaper and more streamlined sequencing and bioinformatics pipelines. However, many groups of inconspicuous but no less evolutionarily or ecologically important marine invertebrates are still neglected in the quest for understanding species- and higher-level phylogenetic relationships using high-throughput sequencing approaches. Here, we alleviate this issue by presenting a 17 gene phylogeny of >200 newly sequenced cheilostome bryozoan species, mainly from New Zealand waters. New Zealand is our geographic region of choice as its cheilostome fauna is taxonomically, functionally and ecologically diverse, and better characterized than many other such faunas in the world. Using this most taxonomically broadly-sampled and statistically-supported cheilostome phylogeny to date, we tested several existing systematic hypotheses based solely on morphological observations. We find that lower taxonomic level hypotheses (species and genera) are very robust while our inferred trees often did not reflect current higher-level systematics (family and above), illustrating a general need for the rethinking of current hypotheses. To illustrate the utility of our new phylogeny, we reconstructed the evolutionary history of frontal shields (i.e. a calcified body-wall layer in ascus-bearing cheilostomes) and asked if the presence of a calcified frontal shield has any bearing on the diversification rates of cheilostomes.