Sorghum phenotypic data in drought and irrigated conditions in Haiti
Data files
Mar 12, 2025 version files 248.26 KB
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Chibas_pheno.csv
246.28 KB
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README.md
1.98 KB
Abstract
These data have been collected in order to assess the predictive ability of genomic prediction models across varying environmental conditions in Haiti, employing two statistical methods. Our assessment encompassed twelve distinct sorghum traits, with genomic predictions conducted both within and across irrigated and water-stress treatments (water stress and water stress 2). The irrigated condition was watered weekly throughout the growing season, and the soil moisture content one week after planting was 77%, with the moisture content never dropping below 50% during the growing season. For water stress 1, plots relied on residual soil moisture and experienced an increase in soil moisture content to 76% due to rainfall during the hard dough stage. A 5 m buffer area separated irrigated and water stress 1 blocks, which also served as a border. For water stress 2, plots were also grown on residual soil moisture. Soil moisture content stood at 74% one week after planting and decreased to 17% by the end of the flowering stage (Figure 1). The latter condition is considered more severe due to slight soil salinity in addition to water stress treatment. This salinity is approximately 0.6 dS/m. The electrical conductivity was measured, using the electrometric method, on the extract of the saturated paste.
250 genotypes were evaluated under drought and irrigated conditions following a split plot design for twelve growth, developmental, and yield-related traits:
- (i) Plant height (cm),
- (ii) Stem diameter (mm),
- (iii) Heading date (days from sowing to anthesis),
- (iv) maturity date (The date on which 80% of the plants in a plot reach maturity),
- (v) Number of leaves (Total leaf number),
- (vi) Number of green leaves (total_green_leaf),
- (vii) Number of stems (total_stem_number),
- (viii) Stem weight (leaf blade plus sheath) measured by weighing (kg/ha) the stems with and without leaves using a digital scale,
- (ix) Leaf weight (kg/ha) obtained as the difference between stem weight with leaf and without leaf,
- (x) volume of extracted juice was measured using a graduated cylinder,
- (xi) concentration of total soluble solids (oBrix) was measured with an Atago brand refractometer graduated from 0 to 33%. This measurement was determined by adding a few drops of subsample sorghum juice from each plot onto the slide of the refractometer,
- (xii) Grain yield (tons/ha) estimated as 85% of the panicles weight harvested at grain physiological maturity.
This dataset named Chibas_pheno.csv contains 3000 rows and 16 columns:
- In the column
genotypes
there are 250 per replicates. - In the column
replicates
there are 4 replicates per treatment. - In the column
treatment
there are 3 treatments (Irrigated, water stress 1 and water stress 2). - In the column
environment
there are 3 environments (Irrigated treatment is referred to as environment 1, water stress 1 is referred to as environment 2 and water stress 3 is referred to as environment 3). - The
12 traits evaluated
are in the columns 5 to 16. NA
in the cells refers to missing values