Data from: Climate, physiological tolerance, and sex-biased dispersal shape genetic structure of Neotropical orchid bees
Lopez-Uribe, Margarita M., Cornell University
Zamudio, Kelly R., Cornell University
Cardoso, Carolina F., Universidade Federal de Minas Gerais
Danforth, Bryan N., Cornell University
Published Feb 03, 2014 on Dryad.
Cite this dataset
Lopez-Uribe, Margarita M.; Zamudio, Kelly R.; Cardoso, Carolina F.; Danforth, Bryan N. (2014). Data from: Climate, physiological tolerance, and sex-biased dispersal shape genetic structure of Neotropical orchid bees [Dataset]. Dryad. https://doi.org/10.5061/dryad.83dm4
Understanding the impact of past climatic events on the demographic history of extant species is critical for predicting species’ responses to future climate change. Paleoclimatic instability is a major mechanism of lineage diversification in taxa with low dispersal and small geographic ranges in tropical ecosystems. However, the impact of these climatic events remains questionable for the diversification of species with high levels of gene flow and large geographic distributions. In this study, we investigate the impact of Pleistocene climate change on three Neotropical orchid bee species (Eulaema bombiformis, E. meriana and E. cingulata) with transcontinental distributions and different physiological tolerances. We first generated ecological niche models to identify species-specific climatically stable areas during Pleistocene climatic oscillations. Using a combination of mitochondrial and nuclear markers, we inferred calibrated phylogenies and estimated historical demographic parameters to reconstruct the phylogeographic history of each species. Our results indicate species with narrower physiological tolerance experienced less suitable habitat during glaciations and currently exhibit strong population structure in the mitochondrial genome. However, nuclear markers with low and high mutation rates show lack of association with geography. These results combined with lower migration rate estimates from the mitochondrial than the nuclear genome suggest male-biased dispersal. We conclude that despite large effective population sizes and capacity for long-distance dispersal, climatic instability is an important mechanism of maternal lineage diversification in orchid bees. Thus, these Neotropical pollinators are susceptible to disruption of genetic connectivity in the event of large-scale climatic changes.
Eulaema bombiformis alignments
Nexus files with sequence alignments for the seven genes (COI, Cytb, CAD, EF1a, EM8, EM70, EM106) analyzed for Eulaema bombiformis.
Eulaema meriana alignments
Nexus files with sequence alignments for the seven genes (COI, Cytb, CAD, EF1a, EM8, EM70, EM106) analyzed for Eulaema meriana.
Eulaema cingulata alignments
Nexus files with sequence alignments for the seven genes (COI, Cytb, CAD, EF1a, EM8, EM70, EM106) analyzed for Eulaema cingulata.
Input csv file for Maxent including all presence points (in latitude-longitude units) used for Niche Modeling Analysis. File includes presence points for 3 species: Eulaema bombiformis (Ebombiformis),Eulaema meriana (Emeriana), Euleama cingulata (Ecingulata).