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Data from: "Diagnostic SNPs for inferring population structure in American mink (Neovison vison) identified through RAD sequencing" in Genomic Resources Notes accepted 1 October 2014 to 30 November 2014

Thirstrup, Janne Pia1; Ruiz-Gonzalez, Aritz2; Pujolar, Jose Martin1; Larsen, Peter Foged3; Nielsen, Rasmus O.2; Randi, Ettore4, 2; Zalewski, Andrzej5; Pertoldi, Cino4; Baratti, Mariella6; Di Lorenzo, Tiziana6; Iannucci, Alessio6; Galassi, Diana Maria Paola7; Iannilli, Valentina8; Jensen, Just1; Postolache, Dragos9; Vendramin, Giovanni Giuseppe9

Published Jan 23, 2015 on Dryad. https://doi.org/10.5061/dryad.85sh7

Data files

Jan 23, 2015 version files 360.27 MB

Abstract

The article documents the public availability of RAD sequencing data and generated SNPs for the American mink (Neovison vison). 224,095 polymorphic loci were identified from 14 mink from which primers were designed for a subset of 380 SNPs. The panel was tested on 211 mink. Fisher’s F-statistics (Fis, FIT and FST) as well as observed (HO), expected (HE) and unbiased expected (uHE) heterozygosity was calculated for the SNPs and 194 SNPs was validated as being useful for population genetic studies.