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Data for: Quantitative analysis of autophagy reveals the role of ATG9 and ATG2 in autophagosome formation

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Apr 03, 2023 version files 67.09 GB

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Abstract

Autophagy is a catabolic pathway required for the recycling of cytoplasmic materials. To define the mechanisms underlying autophagy it is critical to quantitatively characterize the dynamic behavior of autophagy factors in living cells. Using a panel of cell lines expressing HaloTagged autophagy factors from their endogenous loci, we analyzed the abundance, single-molecule dynamics, and autophagosome association kinetics of a wide variety of autophagy proteins involved in autophagosome biogenesis. Surprisingly, autophagosome formation is inefficient and requires ATG2-mediated tethering to donor membranes. Furthermore, our observations support the model that phagophores are initiated by the accumulation of autophagy factors on mobile ATG9 vesicles, and that the ULK1 complex and PI3-kinase form a positive feedback loop required for autophagosome formation. Finally, we demonstrate that the duration of autophagosome biogenesis is approximately 110 seconds. In total, our work provides quantitative insight into autophagosome biogenesis and establishes an experimental framework to analyze autophagy in human cells.