Data from: DNA methylation predicts immune gene expression in introduced house sparrows (Passer domesticus)
Kilvitis, Holly J., University of South Florida
Schrey, Aaron W., Armstrong State Univ., Dept of Biology Savannah GA USA
Ragsdale, Alexandria K., University of Otago
Berrio, Alejandro, The University of Texas at Austin
Phelps, Steve M., The University of Texas at Austin
Martin, Lynn B., University of South Florida
Published May 16, 2019 on Dryad.
Cite this dataset
Kilvitis, Holly J. et al. (2019). Data from: DNA methylation predicts immune gene expression in introduced house sparrows (Passer domesticus) [Dataset]. Dryad. https://doi.org/10.5061/dryad.9811959
Populations undergoing range expansions are often faced with novel selective pressures, and to cope with such challenges, populations must either adapt quickly or exhibit phenotypic plasticity. This latter option allows for rapid phenotypic adjustments and persistence in novel environments, and thus could be advantageous at range‐edges. Our previous research on house sparrows in Kenya—a site of ongoing range expansion— and a growing literature suggests that invasion success is facilitated by epigenetic regulation of gene expression. Previously, we found (i) differences in the expression of a microbial surveillance gene (i.e. Toll‐like receptor 4—TLR4), and (ii) extensive variation in genome‐wide DNA methylation among house sparrows across Kenya. Here, our goal was to investigate whether these two observations are related, specifically whether DNA methylation within a target sequence upstream of the TLR4 transcription start site is associated with variation in TLR4 expression. We found that DNA methylation in the aforementioned region was quite variable among individuals, and variation at one CpG site predicted differences in TLR4 expression. Moreover, we found genetic variation within the same sequence upstream of the TLR4 exon, but this variation did not predict TLR4 expression. To our knowledge, this is the first study to demonstrate an association between DNA methylation and the expression of an ecologically relevant trait in a range‐expanding vertebrate.
Kilvitis et al. Dryad Data
The excel sheet contains identifier data, TLR4 expression, SNP and methylation data.
National Science Foundation, Award: IOS-0940275 and GRFP- 1144244