From individuals to populations: How intraspecific competition shapes thermal reaction norms
Tully, Thomas et al. (2019), From individuals to populations: How intraspecific competition shapes thermal reaction norms, Dryad, Dataset, https://doi.org/10.5061/dryad.9w0vt4bb6
These datasets come from two experiments made in the laboratory. In the first one we have raised isolated collembola from two lineages (labelled TO and HA) from the species Folsomia candida from birth to death and have recorded their growth and reproduction. This has been done at six different temperatures. We have used the growth trajectories of each individual to measure its growth rate and its asymptotic body length.
In the second set of experiment we have raised populations of the same lineages from the same species at the same six temperatures. We have counted and measured the size of each individual every week or so to describe the dynamics of the population size structure over time.
From these dynamics we have measured the growth rate and asymptotic size of some cohorts and the average adult and juvenile densities at the time of these measurements.
In the RData.zip file we have gathered all the information to describe the population size structure of the different populations.
The 06_HA_r1.RData file contains the information for the population structure size dynamics of the first replicate (r1) of the clone HA raised at 6°C (06).
The 26_TO_r3.RData is for the population number 3 of TO raised at 26°C.
"SizeClass" "time" "counts" "Date"
0.0125 0 0 2010-08-12 #zero individual between 0 and 0.0125mm long counted that day (2010-08-12).
0.0375 0 0 2010-08-12
0.0625 0 0 2010-08-12
0.0875 0 0 2010-08-12
0.1125 0 0 2010-08-12
0.1375 0 0 2010-08-12
0.1625 0 0.4 2010-08-12
0.1875 0 0.6 2010-08-12
0.2125 0 0.6 2010-08-12 #0.6 individual between 0.1875 and 0.2125mm long counted that day.
0.2375 0 1 2010-08-12
"counts" is the average number of collembola of size "SizeClass" (in mm) counted at the date "Date" which corresponds to a certain number of days ("time") after the beginning of the followup of that population.
Note that the number of individuals counted for each size class is not a whole number because it has been averaged over about 3 to 5 different photos of the same population taken the same day (see https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0064387 for details).
These files have been used to generate the different panels of the figure S2 in the article.
We also provide a spreadsheet with different sheets.
Cumulative fecundity of isolated individuals
This table gathers the data used to plot the Figure 2 A and B. It give the total number of eggs produced par individuals when they were raised individually.
1. Individual code : unique identification code for the individuals
2. Total number of eggs laid during the whole lifespan by each individual
3. Clone : either HA or TO
4. Temperature (°C) at which each individual has been raised.
Individual code: : unique identification code for the individuals
Clutch number : P1 is for the first clutch, P2 for the second clutch laid by an individual, etc.
Number of eggs : number of eggs in each clutch
Clone : either HA or TO
Temperature (°C): the t° at which each individual has been raised.
This dataset was used to plot the Figure S4A.
Growth and asymptotic size of isolated individuals and of cohorts in populations
This table gathers all the growth rate and asymptotic body length measurements made on the isolated individuals and on the cohorts in the populations.
We have 6 columns:
1. Clone : either HA or TO, the labels of the two clones of Folsomia candida
2. Temperature : the temperature at which the individuals or population have been maintained (°C)
3. Adult density : the mean number of adults per container when the measurement has been made, it is set to 1 for the isolated individuals...
4. Measure : the numeric value of the measure (either growth in mm/day or asymptotic length in mm)
5. Adult_type : it tells if the the measurement has been made on large adults or small ones. Small adults are present in the trimodal populations where two type of adults can coexist. It therefore only concern the asymptotic body length made on some of the cohorts in these populations.
6. Variable : type of variable measured : either growth rate or asymptotic body length.
Cohort asymptotic sizes in the populations
Measurements of asymptotic length in the populations.
1. Cohort : unique identification code for the studied cohorts in the populations
2. Box : unique identification code for the box or population
3. Clone : Clone label HA or TO
4. Temperature : °C
5. Time : number of days since the beginning of the population followup.
6. Size : asymptotic length (mm) of the cohort measured in a population.
7. Adult_type : adult type of the measured cohort - small or large - in the trimodal populations where two types of adults coexist
8. Mean_Adult_Density : mean number of large adults per container when the size measurement is made.
9. Mean_Juvenile_Density : mean number of juveniles per container when the size measurement is made
This dataset is used to plot the Figure 2C, Figure 4B, S4B.
Cohort growth rates in the populations
Box : : unique identification code for the box or population
Clone: : Clone label HA or TO
Time : : number of days since the beginning of the population followup.
MeanAduL : Mean length of the adults already present in the population (mm) when the measurement of growth rate of the cohort is made.
MeanJuvL: Mean length of the juveniles already present in the population (mm) when the measurement of growth rate of the cohort is made
Density: total number of individuals present in the population when the measurement of growth rate of the cohort is made.
DensAdu: Mean number of adults in the population when the measurement of growth rate of the cohort is made.
DensJuv: Mean number of juveniles in the population when the measurement of growth rate of the cohort is made.
Biosurface: Mean total biosurface of Collembola in the population when the measurement of growth rate of the cohort is made.(mm^2)
BiosurfAdu: Mean biosurface of adult Collembola in the population when the measurement of growth rate of the cohort is made. (mm^2)
BiosurfJuv: Mean biosurface of juveniles in the population when the measurement of growth rate of the cohort is made. (mm^2)
t0 and t1: time in days since the beginning of the population followup that define the beginning and end of the growth period of the cohort on which the growth rate has been measured.
Growth rate: growth rate of the cohort measured on the population structure diagram in mm/day.
Cohort number: within each population we have measured one or several cohorts)
This dataset is used to plot the Figure S5.