Distribution dataset of the 140 Chinese mountain floras and dated phylogenetic tree
Data files
May 09, 2024 version files 6.37 MB
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Danxia-3146.tre
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dated_phylogeny_tree.tre
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Desert-4077.tre
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distribution_data_of_140_mountain_floras.csv
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Granitic-13005.tre
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Karst_Granitic-7423.tre
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Karst-6941.tre
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README.md
Abstract
We compiled checklists of species of angiosperm for 140 Chinese mountain flora from previously published, comprehensive species checklists, white papers, and research papers. From our initial checklists, we excluded all nonnative species, and we reconciled taxonomy to the Leipzig Catalogue of Vascular Plants (LCVP), with infraspecific taxa combined under their respective species. Following taxonomic reconciliation and categorization within higher ranks, our dataset comprised a total of 17,576 species in 2,585 genera belonging to 251 families and 56 orders.
In addition, six dated phylogenetic trees by the V.PhyloMaker2 approach are provided.
README: Distribution dataset of the 140 Chinese mountain floras and dated phylogenetic tree
This dataset includes seven files:
- distribution data of 140 mountain floras.csv This is the distribution data comprising 17,576 angiosperm species representing 140 Chinese mountain floras.
- dated_phylogeny_tree.tre This file is a .tre file included 17,576 species.
- Danxia-3146.tre This file is a .tre file included 3146 species which occurs in Danxia landform mountain.
- Desert-4077.tre This file is a .tre file included 4077 species which occurs in desert landform mountain.
- Granitic-13005.tre This file is a .tre file included 13005 species which occurs in granitic landform mountain.
- Karst_Granitic-7423.tre This file is a .tre file included 7423 species which occurs in karst_granitic landform mountain.
- Karst-6941.tre This file is a .tre file included 6941 species which occurs in karst landform mountain.
Methods
Mountain flora data was generation based on previously published flora data by manual input. Phylogenetic reconstruction was performed in R (http://www.r-project.org/) by the package ‘V.PhyloMaker2’ .