Data from: Phylogenomic data reveal three new families of poorly studied Solifugae (camel spiders)
Data files
Jul 23, 2024 version files 54.34 MB
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Dinorhax.treels
14.26 KB
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Occ1_Alignment.phylip
31.37 MB
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Occ25_Alignment.phylip
16.55 MB
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Occ40_Alignment.phylip
5.51 MB
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Occ50_Alignment.phylip
873.93 KB
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README.md
1.19 KB
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Trichotoma.treels
16.15 KB
Abstract
The systematics of the arachnid order Solifugae have been an enigma, owing to challenges in interpreting morphology, a paucity of molecular phylogenetic studies sampling across the group, and a dearth of taxonomic attention for many lineages. Recent work has suggested that solifuge families largely exhibit contiguous distributions and reflect patterns of vicariance, with the exception of three families: Melanoblossidae, Daesiidae and Gylippidae. Morphological studies have cast doubt on their existing circumscriptions and the present composition of these taxa renders their distributions as disjunct. We leveraged ultraconserved elements (UCEs) to test the phylogenetic placement of three key lineages of Solifugae that cause these anomalous distributions: Dinorhax rostrumpsittaci (putative melanoblossid), Namibesia (putative daesiid), and Trichotoma (putative gylippid). Phylogenetic placement of these three genera based on UCEs rendered the families that harbor them as para- or polyphyletic, recovering instead relationships that better accord with a biogeographic history driven by vicariance. Toward a stable and phylogenetically informed classification of Solifugae, we establish three new families, Dinorhaxidae new rank, Namibesiidae new rank and Lipophagidae new rank.
https://doi.org/10.1016/j.ympev.2023.107989
Description of the data and file structure
- Ultraconserved elements (UCE) alignment files for occupancies: 1% (Occ1_Alignment.phylip), 25% (Occ25_Alignment.phylip), 40% (Occ40_Alignment.phylip) and 50% (Occ50_Alignment.phylip) used for phylogenetic analyses performed using IQ-TREE v.2.1.2. Model selection was performed for each dataset using ModelFinderPlus using MFP + MERGE flag for each locus partition. Nodal support was estimated via 1,000 ultrafast bootstrap (UFBoot) resampling replicates and the Shimodaira-Hasegawa-like approximate likelihood ratio test (SH-aLRT) appended with the flag -bnni.
- Topology Test files: Input file for testing placement of Dinorhax (Dinorhax.treels) and Trichotoma (Trichotoma.treels). These tests include approximately unbiased (AU), bootstrap proportion (BP), SH-aLRT, Kishino-Hasegawa (KH), and expected likelihood weight (ELW) using 1,000 resampling estimated log-likelihoods (RELL) in IQ-TREE.