Data from: Variations in HLA-B cell surface expression, half-life and extracellular antigen receptivity
Yarzabek, Brogan1; Zaitouna, Anita J.1; Olson, Eli1; Silva, Gayathri N.1; Geng, Jie1; Geretz, Aviva2; Thomas, Rasmi2; Krishnakumar, Sujatha3; Ramon, Daniel S.4; Raghavan, Malini1
- University of Michigan–Ann Arbor
- Walter Reed Army Institute of Research
- Immucor (United States)
- Mayo Clinic in Arizona
Published Jul 10, 2019
on Dryad.
https://doi.org/10.5061/dryad.f0s23r8
Data files
Jul 10, 2019 version files 48.54 GB
Abstract
The highly polymorphic human leukocyte antigen (HLA) class I molecules present peptide antigens to CD8+ T cells, inducing immunity against infections and cancers. Quality control mediated by peptide loading complex (PLC) components is expected to ensure the cell surface expression of stable peptide-HLA class I complexes. This is exemplified by HLA-B*08:01 in primary human lymphocytes, with both expression level and half-life at the high end of the measured HLA-B expression and stability hierarchies. Conversely, low expression on lymphocytes is measured for three HLA-B allotypes that bind peptides with proline at position 2, which are disfavored by the transporter associated with antigen processing. Surprisingly, these lymphocyte-specific expression and stability differences become reversed or altered in monocytes, which display larger intracellular pools of HLA class I than lymphocytes. Together, the findings indicate that allele and cell-dependent variations in antigen acquisition pathways influence HLA-B surface expression levels, half-lives and receptivity to exogenous antigens.
Usage notes
README
dryad.f0s23r8 README.rtf
Beads
fcs files for all bead measurements
Donor 23 - Bw4
fcs files for ABC Donor 23
Donor 62 - Bw4
fcs files for ABC donor 62
Donor 106 - Bw4
fcs files for ABC donor 106
Donor 112 - Bw4
fcs files for ABC donor 112
Donor 119 - Bw4
fcs files for ABC donor 119
Donor 126 - Bw4
fcs files for ABC donor 126
Donor 136 - Bw4
fcs files for ABC donor 136
Donor 142 - Bw4
fcs files for ABC donor 142
Donor 143 - Bw4
fcs files for ABC donor 143
Donor 155 - Bw4
fcs files for ABC donor 155
Donor 156 - Bw4
fcs files for ABC donor 156
Donor 202 - Bw4
fcs files for ABC donor 202
Donor 5 - Bw4:Bw6
fcs files for ABC donor 5
Donor 8 - Bw4:Bw6
fcs files for ABC donor 8
Donor 12 - Bw4:Bw6
fcs files for ABC donor 12
Donor 14 - Bw4:Bw6
fcs files for ABC donor 14
Donor 20 - Bw4:Bw6
fcs files for ABC donor 20
Donor 28 - Bw4:Bw6
fcs files for ABC donor 28
Donor 75 - Bw4:Bw6
fcs files for ABC donor 75
Donor 79 - Bw4:Bw6
fcs files for ABC donor 79
Donor 80 - Bw4:Bw6
fcs files for ABC donor 80
Donor 91 - Bw4:Bw6
fcs files for ABC donor 91
Donor 94 - Bw4:Bw6
fcs files for ABC donor 94
Donor 111 - Bw4:Bw6
fcs files for ABC donor 111
Donor 121 - Bw4:Bw6
fcs files for ABC donor 121
Donor 128 - Bw4:Bw6
fcs files for ABC donor 128
Donor 130 - Bw4:Bw6
fcs files for ABC donor 130
Donor 130 - Bw4-Bw6.zip
Donor 141 - Bw4:Bw6
fcs files for ABC donor 141
Donor 137 - Bw4:Bw6
fcs files for ABC donor 137
Donor 168 - Bw4:Bw6
fcs files for ABC donor 168
Donor 178 - Bw4:Bw6
fcs files for ABC measurements for donor 178
Donor 187 - Bw4:Bw6
fcs files for ABC measurements for donor 187
Donor 194 - Bw4:Bw6
fcs files for ABC measurements for donor 194
Donor 198 - Bw4:Bw6
fcs files for ABC donor 198
Donor 1 - Bw6
fcs files for ABC donor 1
Donor 9 - Bw6
fcs files for ABC donor 9
Donor 17 - Bw6
fcs files for ABC donor 17
Donor 24 -Bw6
fcs files for ABC donor 24
Donor 26 - Bw6
fcs files for ABC donor 26
Donor 31 - Bw6
fcs files for ABC donor 31
Donor 34 - Bw6
fcs files for ABC donor 34
Donor 35 - Bw6
fcs files for ABC donor 35
Donor 55 - Bw6
Donor 57 - Bw6
fcs files for ABC donor 57
Donor 71 - Bw6
fcs files for ABC donor 71
Donor 102 - Bw6
fcs files for ABC donor 102
Donor 115 - Bw6
fcs files for ABC donor 115
Donor 120 - Bw6
fcs files for ABC donor 120
Donor 124 - Bw6
fcs files for ABC donor 124
Donor 131 - Bw6
fcs files for ABC donor 131
Donor 166 - Bw6
fcs files for ABC donor 166
Donor 196 - Bw6
fcs files for ABC donor 196
Donor 201 - Bw6
fcs files for ABC donor 201
Donor 206 - Bw6
fcs files for ABC donor 206
W6/32 and Tapasin Intracellular Staining
This data corresponds to Figure 4 A and B. These are the fcs files for the flow cytometry experiments.
W6-32_Tapasin_Intracellular-Staining.zip
Shannon Entropy calculations
This data corresponds to Figure 7. It consists of the excel spreadsheet for the Shannon Entropy calculations.
ShannonEntropy.zip
Donor8: Bw4 Stability
Data corresponding to HLA-Bw4 stability for Donor 8.
Donor8.zip
Donor14: Bw4 Stability
Data corresponding to HLA-Bw4 stability for Donor 14.
Donor14.zip
Donor20: Bw4 Stability
Data corresponding to HLA-Bw4 stability for Donor 20.
Donor20.zip
Donor62: Bw4 Stability
Data corresponding to HLA-Bw4 stability for Donor 62.
Donor62.zip
Donor80: Bw4 Stability
This data corresponds to the HLA-Bw4 stability data (flow cytommetry files) for Donor 80.
Donor80.zip
Donor64_Part1/2 Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 64.
Donor64_Part1.zip
Donor64_Part2/2: Bw4 Stability
This data corresponds to the HLA-Bw4 stability data (flow cytommetry files) for Donor 64 (Part 2/2).
Donor64_Part2.zip
Donor156: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 156.
Donor156.zip
Donor91: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 91.
Donor91.zip
Donor111: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 111.
Donor111.zip
Donor121: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 121.
Donor121.zip
Donor126: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 126.
Donor126.zip
Donor128: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 128.
Donor128.zip
Donor142: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 142.
Donor142.zip
Donor155: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 155.
Donor155.zip
Donor194: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 194.
Donor194.zip
Donor198: Bw4 Stability
This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 198.
Donor198.zip
Donor8: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 8.
Donor8.zip
Donor14: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 14.
Donor14.zip
Donor24_Part1/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 24.
Donor24_Part1.zip
Donor24_Part2/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 24.
Donor24_Part2.zip
Donor24_Part3/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 24.
Donor24_Part3.zip
Donor64_Part1/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 64.
Donor64_Part1.zip
Donor64_Part2/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 64.
Donor64_Part2.zip
Donor64_Part3/3: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 64.
Donor64_Part3.zip
Donor55: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 55.
Donor55.zip
Donor121: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 121.
Donor121.zip
Donor71: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 71.
Donor71.zip
Donor28_Part1/2: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 28.
Donor28_Part1.zip
Donor28_Part2/2: Bw6 Stability
This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 28.
Donor28_Part2.zip
Donor31_Part1/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 31.
Donor31_Part1.zip
Donor31_Part2/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 31.
Donor31_Part2.zip
Donor31_Part3/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 31.
Donor31_Part3.zip
Donor91: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 91.
Donor91.zip
Donor111: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 111.
Donor111.zip
Donor94_Part1/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 94.
Donor94_Part1.zip
Donor94_Part2/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 94.
Donor94_Part2.zip
Donor215: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 215.
Donor215.zip
Donor206: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 206.
Donor206.zip
Donor198: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 198.
Donor198.zip
Donor141: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 141.
Donor141.zip
Donor120: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 120.
Donor120.zip
Donor124: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 124.
Donor124.zip
Donor128: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 128.
Donor128.zip
Donor131: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 131.
Donor131.zip
Donor137_Part1/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 137.
Donor137_Part1.zip
Donor137_Part2/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 137.
Donor137_Part2.zip
Donor137_Part3/3: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 137.
Donor137_Part3.zip
Donor178_Part1/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 178.
Donor178_Part1.zip
Donor178_Part2/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 178.
Donor178_Part2.zip
Donor187_Part1/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 187.
Donor187_Part1.zip
Donor187_Part2/2: Bw6 Stability
This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 187.
Donor187_Part2.zip
Donor 64 ImageStream
Imaging cytometry data for donor 64. Daf file format.
Donor 94 ImageStream
Imaging cytometry data for donor 94. Daf file format.
Donor 237 ImageStream
Imaging cytometry data for donor 237. Daf file format.
Donor 14
Data for Donor 14.
Donor 24
Data for donor 24
Donor 28
Data for donor 28
Donor 31
Data for donor 31
Donor 64
Data for donor 64
Donor 71
Data for donor 71
Donor 94
Data for donor 94
Donor 137
Data for donor 137
Donor 141
Data for donor 141
Donor 178
Data for donor 178
Donor 187
Data for donor 187
Donor 198
Data for donor 198