Data from: Priors and posteriors in Bayesian timing of divergence analyses: the age of butterflies revisited
Data files
Jan 16, 2019 version files 30.53 MB
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S_10a_Foster_2017_median_ages.tre
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S_10b_Foster_2017_mode_ages.tre
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S_11_Yule_treePrior_median ages.tre
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S_12_core_analysis_detailed_tree_figure.pdf
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S_2a_Core_analysis_dataset.nex
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S_2b_Reduced_dataset.nex
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S_2c_Dataset_with_COI.nex
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S_3a_core analysis_RAxML_topology.pdf
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S_3b_core_analysis_median_ages.tre
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S_4_deep_Level_fossils_median_ages.tre
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S_5_shallow_Level_fossils_median_ages.tre
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S_6_reduced_dataset_median_ages.tre
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S_7_exponential_priors_median_ages.tre
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S_8_nuclear_and_COI_median_ages.tre
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S_9_lognormalPriors_median_ages.tre
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S1_List_of_taxa.xlsx
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Abstract
The need for robust estimates of times of divergence is essential for downstream analyses, yet assessing this robustness is still rare. We generated a time-calibrated genus-level phylogeny of butterflies (Papilionoidea), including 994 taxa, up to 10 gene fragments and an unprecedented set of 12 fossils and 10 host-plant node calibration points. We compared marginal priors and posterior distributions to assess the relative importance of the former on the latter. This approach revealed a strong influence of the set of priors on the root age but for most calibrated nodes posterior distributions shifted from the marginal prior, indicating significant information in the molecular dataset. Using a very conservative approach we estimated an origin of butterflies at 107.6 Ma, approximately equivalent to the latest Early Cretaceous, with a credibility interval ranging from 89.5 Ma (mid Late Cretaceous) to 129.5 Ma (mid Early Cretaceous). In addition, we tested the effects of changing fossil calibration priors, tree prior, different sets of calibrations and different sampling fractions but our estimate remained robust to these alternative assumptions. With 994 genera, this tree provides a comprehensive source of secondary calibrations for studies on butterflies.
- Chazot, Nicolas; Wahlberg, Niklas; Freitas, André Victor Lucci et al. (2019). Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited. Systematic Biology. https://doi.org/10.1093/sysbio/syz002
