Data from: Density-dependent unidirectional hybridization between the Japanese pond turtle, Mauremys japonica and the exotic Reeves’ pond turtle, Mauremys reevesii in Japan, inferred from molecular and morphological analyses
Data files
May 24, 2024 version files 87.63 KB
Abstract
Hybridisation between the indigenous Japanese pond turtle, Mauremys japonica, and the exotic Reeves’ pond turtle, Mauremys reevesii, is widespread in Japan. In this study, we examined this hybridisation using an analysis of mtDNA and 11 microsatellite markers (MS) combined with morphometry. In a Bayesian clustering analysis of MS, the admixture of two clusters equivalent to the two species was detected in the Seto Inland Sea and Ise Bay regions. While mtDNA showed reciprocal hybridisation between the two species, their hybrids tended to possess the mtDNA of the rarer species at each locality. Contrary to preceding studies, F2/later generations outnumbered F1 generations. In addition, the admixture of two mtDNA lineages (Chinese and Korean) of M. reevesii was widely observed in all regions, together with the range expansion of the recently introduced Chinese lineage. A significant correlation was observed between plastron morph and assignment probability of MS, showing that plastron morphology reflects the degree of introgression by M. reevesii in M. japonica. This finding means that the reproductive interference of the dominant species on a rarer species is a major factor driving the hybridisation of the two Mauremys species. In addition, the range expansion of the Chinese lineage of M. reevesii appears to enhance the introgression by M. reevesii in M. japonica.
README: Data from: Density-dependent unidirectional hybridization between the Japanese pond turtle, Mauremys japonica and the exotic Reeves’ pond turtle, Mauremys reevesii in Japan, inferred from molecular and morphological analyses
This is the dataset of microsatellites used in the above paper. The Excel spreadsheet contains microsatellite data for 409 samples of Mauremys japonica, M. reevesii, and their hybrids from one population.
Data are formatted for analysis in the software Genalex (Peakall, R. & Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295; Peakall, R.& Smouse, P.E. (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28, 2537-2539); https://biology-assets.anu.edu.au/GenAlEx/Welcome.html
Data are as per Genalex formatting requirements:
Row 1: # of loci (11), # of individuals (409), # of populations (1).
Row 2: title.
Row 3: name of each of 11 loci.
Rows 4-695: microsatellite data for each of 11 microsatellite loci for 409 samples.
Column A: sample name.
Column B: restored population name
Columns C-X: Allele size at each of 11 microsatellite loci for each sample.
Note this table can be read and analysed in Genalex. For details of sample information, see Table S1 of "Density-dependent unidirectional hybridization between the Japanese pond turtle, Mauremys japonica and the exotic Reeves’ pond turtle, Mauremys reevesii in Japan, inferred from molecular and morphological analyses" in Zoological Journal of Linnean Society.
Methods
See Matsuda et al. (2024), Density-dependent unidirectional hybridization between the Japanese pond turtle, Mauremys japonica and the exotic Reeves’ pond turtle, Mauremys reevesii in Japan, inferred from molecular and morphological analyses. Zoological Journal of the Linnean Society.