Annotation of genome of brown-marbled grouper (Epinephelus fuscoguttatus)
Cite this dataset
Yang, Yang et al. (2021). Annotation of genome of brown-marbled grouper (Epinephelus fuscoguttatus) [Dataset]. Dryad. https://doi.org/10.5061/dryad.gqnk98shz
Abstract
Brown-marbled grouper (Epinephelus fuscoguttatus) is an important fish species for coral reef ecosystem and marine aquaculture industry. In the study, a high quality chromosome-level genome of brown-marbled grouper was assembled using Oxford Nanopore technology and Hi-C technology. The GC content and heterozygosity were approximate 42% and 0.35 %, respectively in brown-marbled grouper genome. A total of 230 contigs with total length of 1,047 Mb were assembled, contig N50 was 13.8 Mb, 228 contigs (99.13%) can be anchored into 24 chromosomes. A total of 24,005 protein-coding genes were predicted, among of them, 23,862 (99.4%) predicted genes were annotated. The high quality chromosome-level genome of brown-marbled grouper will provide pivotal genetic foundation for further researches of grouper.
Funding
Agriculture Research System of China, Award: ARS-47
Science and Technology Planning Project of Guangzhou, Award: 201804020013
National Natural Science Foundation of China, Award: 31802266
National Natural Science Foundation of China, Award: 31872572
Yang Fan Innovative & Entrepreneurial Research Team Project, Award: No.201312H10
National Natural Science Foundation of China, Award: u1401213
Program of the China-ASEAN Maritime Cooperation Fund of the Chinese government, Award: 42000-41170002
Science and Technology Planning Project of Guangzhou, Award: 2.02E+11
Yang Fan Innovative & Entrepreneurial Research Team Project, Award: No.201312H10
Program of the China-ASEAN Maritime Cooperation Fund of the Chinese government, Award: 42000-41170002