A roadmap to durable BCTV resistance using long-read genome assembly of genetic stock KDH13
Data files
Nov 15, 2021 version files 2.62 GB
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01_KDH13_PacBio_ordered.fa
501 MB
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01_KDH13ordered_maker.gff
47.40 MB
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02_contig_genes2.txt
388.70 KB
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02_KDH13_PacBio.pep
179.25 MB
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02_KDH13.protiens2.fa
37.03 MB
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02_KDH13toEL10_75_besthits.blast
5.64 MB
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02_KDH13toEL10.blast
171.39 MB
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02_pfam_scan_out_sorted.txt
9.97 MB
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03_F1_candidateSV.vcf.gz
12.10 MB
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03_Freebayes_varients.vcf
1.49 GB
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03_KDH13_candidateSV.vcf.gz
8.66 MB
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03_P1_candidateSV.vcf.gz
9.73 MB
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EL10_2.gff
48.29 MB
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Figure3_cluster.vcf.gz
101.64 MB
Abstract
PacBio Sequence data associated with genetic stock KDH13.Datasets include genome resources and annotated files associated with the manuscript "Long-read genome assembly of Double Haploid Sugar Beet KDH13 provides roadmap for durable genetic resistance to Beet Curly Top Virus". This includes genome assembly, ordered genome assembly, protein predictions, variant call format files for an F1 hybrid (KDH13xKDH19-17).
Detailed information such as code is stored within the github repo https://github.com/BetaGenomeNinja/PacBio_KDH13
Detailed methods are documented in the publication "Long-read genome assembly of Double Haploid Sugar Beet KDH13 provides roadmap for durable genetic resistance to Beet Curly Top Virus".
- Galewski, Paul J.; Eujayl, Imad (2021), A roadmap to Durable BCTV Resistance Using Long-Read Genome Assembly of Genetic Stock KDH13, Plant Molecular Biology Reporter, Journal-article, https://doi.org/10.1007/s11105-021-01307-5