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MorphoGraphX2: Datasets that demonstrate how to create positional information with local coordinate systems

Citation

Smith, Richard S. (2022), MorphoGraphX2: Datasets that demonstrate how to create positional information with local coordinate systems, Dryad, Dataset, https://doi.org/10.5061/dryad.m905qfv1r

Abstract

Confocal image data sets and segmented meshes from various plant organs including the Arabidopsis root, flower, gynoecium, meristem, embryo and ovule. The data sets are used to demonstrate features available in MorphoGraphX software (www.MorphoGraphX.org), and how to use positional information to add spatial context to quantitative cellular data. Also included are longform video tutorials, and source code for the MorphoGraphX software.

Methods

The data was collected using confocal microscopy on fixed or live imaged samples. Please see the publication for detailed methods for each dataset.

Usage Notes

Confocal files are provided in original microscope formats, and/or as tifs exported from Fiji.

Meshes extracted from the data are in .mgxm (MorphoGraphX mesh) format.

Source code for MorphoGraphX is included, and has been compiled and tested on Ubuntu 20.04 with Cuda 11.4.

Tutorials are in standard mp4 format.

Funding

N/A