Cold waves in the Amazon rainforest and their ecological impact
Data files
Dec 24, 2024 version files 1.13 MB
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dailyTemp_iB.xlsx
478.36 KB
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dailyTemp_TMS.xlsx
563.48 KB
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Malaise.xlsx
10.28 KB
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Mammals.xlsx
10.86 KB
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Pitfalls.xlsx
11.71 KB
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Plots.xlsx
10.07 KB
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README.md
3.44 KB
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Thermaltolerance.xlsx
40.41 KB
Abstract
Cold waves crossing the Amazon rainforest are a rare phenomenon predicted to increase in intensity under climate change. We here describe an extensive cold wave occurring in June 2023 in Amazonian-Andean forests, compared environmental temperatures to experimentally tested thermal tolerances and its impact on lowland animal communities (insects and wild mammals). While we found strong reductions in abundance of all animal groups under the cold wave, tropical lowland animals showed thermal tolerance limits below the lowest environmental temperatures measured during the cold wave, and abundances of most studied taxa recovered over the next season; nevertheless, small thermal safety margins suggest that an increased intensity of cold waves in the future could imperil animal communities in the Amazon.
README: Cold waves in the Amazon rainforest and their ecological impact
https://doi.org/10.5061/dryad.ns1rn8q31
Description of the data and file structure
Climate and biodiversity were monitored at three study locations ("plots") in the Peruvian rainforest. We used thermal sensors, pitfall traps, malaise traps, manual netting and camera traps. Thermal tolerance experiments were conducted with a programmable thermoblock.
Files and variables
File: Malaise.xlsx
Description: Malaise traps for community biomass of mainly flying insects
Variables
- Plot: ID of study site
- Field_season: number of sampling round
- dateon: Date of setting up the trap
- dateout: Date of removing the trap
- Note: special observations
- Mass: wet insect biomass in gram
File: dailyTemp_iB.xlsx
Description: temperature measured by iButton loggers
Variables
Tmean: daily mean temperature
Tmin: daily minimum temperature
Tmax: daily maximum temperature
min_10th: minimum 10th percentile
max_10th: maximum 10th percentile
below_10th: Cold wave criterium: is daily mean below min. and max. 10th percentile
Field_season: number indicates field season 1, 2 or 3. Empty cells are measurements outside the sampling period
File: dailyTemp_TMS.xlsx
Description: temperature measured by TMS soil loggers, unit for all variables listed below is °C
Variables
- Tmean: daily mean air temperature
- Tmin: daily minimum air temperature
- Tmax: daily maximum air temperature
- TSurfmean: daily mean surface temperature
- TSurfmin: daily minimum surface temperature
- TSurfmax: daily maximum surface temperature
- TSoilmean: daily mean soil temperature
- TSoilmin: daily minimum soil temperature
- TSoilmax: daily maximum soil temperature
File: Mammals.xlsx
Description: Mammal data from camera traps
Variables
- Diversity: number of different species recorded
- Abundance: number of individuals recorded (considered as new individual if minimum one hour between observations)
- Contains list of species with its number of observations. Empty cells indicate, that no individuals of this species were observed.
- Rodents grouped together (morphospecies)
File: Plots.xlsx
Description: Coordinates of all study locations along the gradient (not only cold wave focus location)
Variables
- Plot: ID of study site
- Latitude
- Longitude
- Elevation (masl): in meters above sea level, masl
File: Pitfalls.xlsx
Description: data from pitfall traps for ground-dwelling arthropods
Variables
- Trap B = fermented banana, M = rotten meat, D = humand dung
- Mass_Total: wet total biomass
- Mass_Rest: biomass without dung beetles and flies
- Mass_Sca: biomass dung beetles
- Number_Sca: number of dung beetles
File: Thermaltolerance.xlsx
Description: data from thermal tolerance experiments. Empty cells indicate not applicable data
Variables
- CTmin: Critical minimal limit, temperature in °C
- CTmax: Critical maximum limit, temperature in °C
- Regain_mov: Regain of movement within 1 hour after experiment
- Observer: 3 different observers conducted the tests, indicated with 1, 2 or 3
File: ColdWave_analyses_figures.R
Description: code written in the software R to analyze and create the figures included in the manuscript
Code/software
Microsoft Excel
R Studio
Methods
Temperature data
Air temperature was measured at each plot along the elevation gradient with iButton sensors (Analog Devices, Inc, Wilmington, USA) at 1.5 m height every four hours, hanging from a horizontal branch. The sensors were shielded with white plastic dishes (diameter ca. 18 cm) to protect them from rain and direct sunlight [13]. In addition, each plot was equipped with a TOMST4-temperature and soil humidity logger (TOMST s.r.o., Prague, Czech Republic), continuously measuring temperature and soil humidity at 6 cm depth, as well as temperature at the surface and in 15 cm height.
Insect data
(1) Malaise: At each plot in each field season, one malaise trap was operated for seven days. Malaise traps were based on the Townes Malaise trap model, albeit with a black roof and a slightly smaller size (dimensions of the capture area: height front: 0.90 m; height rear: 0.60 m; length: 1.60 m); Ethanol (96 %) was used as the capture fluid to ensure the preservation of specimens. For each malaise trap sample, the wet, in ethanol preserved,insect biomass was determined by weighingthe insects usinga metal sieve. When the time between two drops of ethanol reached 10 s, the wet weight of the sample (biomass) was measured using a precision scale.
(2) Baited pitfall traps: At each plot in each field season, three differently baited pitfall traps (human dung, chicken carrion, fermented banana) were set up in a triangle with ~50 m distance and left open for two days. Traps consisted of two stacked cups (ca. 500 ml) buried with the upper rim being even with the surface, filled halfway with water and a drop of unscented detergent. Baits wrapped in gauze were hanging in a 45-degree angle over the cup. The traps were covered with a triangular plastic tarp to protect them from rain. All collected insects were counted, and the wet biomass was determined by placing all organisms of a sample individually with forceps on a microscale.
(3) Measurements of thermal tolerance limits: We determined critical thermal minima (CTmin) and maxima (CTmax) of insects using an Eppendorf Thermostat C [16]. In total, 414 insects (Coleoptera (n = 136), Diptera (n = 80), Hymenoptera (n = 93), Lepidoptera (n = 37), Hemiptera (n = 41) and Orthoptera (n = 27)), which were collected by hand-netting on the study plots, were placed inside plastic tubes in the Eppendorf Thermostat C and exposed to gradually increasing or decreasing heat (acclimation temperature 28 °C for 10 min, ramping rate 0.5 °C per minute). We tested for adaptation to colder temperatures by exposing a subset of insects (n = 64) to an acclimation temperature of 14 °C for 10 min before following the normal protocol. CTmax and CTmin were defined as the temperature at which insects lost their locomotive ability, at which the insect was removed from the Thermostat. For both CTmax and CTmin temperatures, we also noted if insects were dead or still alive after a waiting time of 60 minutes (after the end of the experiment) at room temperature.
Mammal data
Mammal data werecollected by camera trap monitoring within each of the three field seasons. At each plot, four motion- and infrared-operated camera traps (Bushnell Trophy Cam HD Essential) were attached to a tree at ~1 m height, if available near trails, for seven days, summing up to 6048 camera trap hours for the three plots. Cameras were programmed to record 10 second videos with an inactive period of one minute. For analyses of mammal abundance, we considered two videos of the same species as independent with one hour time difference. All species were identified using the field guide from Emmons and Feer [19] and taxonomy was updated according to the ASM database (ASM Mammal Diversity Database). Abundance was calculated by summing up all observed individuals of each species (for each plot in each season), and species richness by counting the number of recorded species per plot and season.