Urbanization alters the song propagation of two human-commensal songbird species: Active space, amplitude, and attenuation code
Data files
Jan 15, 2025 version files 216.12 KB
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AmpAtten_withPCA.csv
194.34 KB
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AS_withPCA.csv
19.72 KB
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README.md
2.06 KB
Abstract
Urban expansion has increased pollution including both physical (e.g., exhaust, litter) and sensory (e.g., anthropogenic noise) components. Urban avian species tend to increase the frequency and/or amplitude of songs to reduce masking by low frequency noise. Nevertheless, song propagation to the receiver can also be constrained by the environment. We know relatively little about how this propagation may be altered across species that (1) vary in song complexity and (2) inhabit areas along an urbanization gradient. We investigated differences in song amplitude, attenuation, and active space, or the maximum distance a receiver can detect a signal, in two human-commensal species: the house sparrow (Passer domesticus) and house finch (Haemorhous mexicanus). We described urbanization both discretely and quantitatively to investigate the habitat characteristics most responsible for propagation changes. We found mixed support for our hypothesis of urban-specific degradation of songs. Urban songs propagated with higher amplitude; however, urban song fidelity was species-specific and showed lowered active space for urban house finch songs. Taken together, our results suggest that urban environments may constrain the propagation of vocal signals in species-specific manners. Ultimately this has implications for the ability of urban birds to communicate with potential mates or kin.
README: Urbanization alters the song propagation of two human-commensal songbird species: Active space, amplitude, and attenuation code
https://doi.org/10.5061/dryad.q573n5tr5
This dataset contains the active space, amplitude, and attenuation data, and the SAS code used to analyze them using general linear mixed models to model the independent effects of urbanization, species, and song exemplar (within a species) on our dependent variables.
Description of the data and file structure
The active space file and the amplitude/attenuation file are both in csv format.
For active space (AS_withPCA.csv), the "Location" column refers to the site name. The habitat type (i.e., urban, suburban, or rural) is listed in the "Urban" column. The PCA data (PC1, PC2, PC3, and PC4) is also listed for each site. In the "Species" column, HOFI refers to house finch and HOSP refers to house sparrow. The "Exemplar" column refers to the specific song exemplar (1-15 for each species). In the last column, "AS" refers to active space and is listed in meters.
For amplitude/attenuation (AmpAtten_withPCA.csv), the "Location" column refers to the site name. Site names are abbreviated codes for the names of each site (e.g., PC = Pigeon Creek). The habitat type (i.e., urban, suburban, or rural) is listed in the "Urban" column. The PCA data (PC1 and PC2) is also listed for each site. The "Distance" column refers to the distance between the speaker and recorder; this distance is in meters. In the "Species" column, HOFI refers to house finch and HOSP refers to house sparrow. The "Exemplar" column refers to the specific song exemplar (1-15 for each species). The last two columns are "Amplitude" (units dB SPL) and "Attenuation" (units dB SPL).
Code/Software
The code provided is for SAS software (SAS onDemand for Academics, SAS Institute Inc., Cary, NC, USA). The "ActiveSpaceCode.txt" is for analyzing the active space data. The "AmplitudeandAttenuationCode.txt" is for analyzing the amplitude and attenuation data.
Methods
This data was collected for the manuscript titled "Urbanization alters the song propagation of two human-commensal songbird species."
Data were originally .wav files collected during a propagation study. The .wav files were clipped so that each file contained a single exemplar with 0.1 seconds of silence before and after the exemplar. Each single-song .wav file was imported into Raven Pro to calculate active space using the "batch correlator" function. Within each site and exemplar, we cross correlated the song at 1m to the song at each consecutive distance. We also corss correlated the song at 1m to the background noise at each site. To determine active space from the cross correlations, we created a linear line of best fit between the cross correlation value and distance (5m-100m) for each stimulus. We then determined the distance that the regression line intersected with the background noise (a horizontal line over distance). We defined the distance of the intersection point as active space.
The single-song .wav files were also imported into Praat to calculate amplitude. Before calculation, songs were filtered so that any sound more than 100 Hz below the minumum frequency of the song was removed. Then, amplitude was calculated in Praat using the "get intensity" function. We calculated attenuation in excel as the difference in amplitude at 1m (the reference signal) to each consecutive distance (5m, 10m-100m in 10m increments).