Fine-scale phylogeography of coastal fishes in the South China Sea: Possible roles of biological traits and geography
Data files
Oct 12, 2021 version files 41.40 MB
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arlequin.zip
56.71 KB
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BMS.zip
1.79 MB
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BSP.zip
107.84 KB
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MSN.zip
61.87 KB
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PCF.zip
39.38 MB
Abstract
This dataset contains input files for a suite of phylogeographic analyses conducted on several coastal fishes in the South China Sea, results of which described in the paper "Fine-scale phylogeography of coastal fishes in the South China Sea: Possible roles of biological traits and geography", submitted to Journal of Biogeography.
Outline of each analysis is as follows:
arlequin: Estimations of genetic diversity indices and genetic differentiation using Arlequin.
BSP: Reconstruction of historical demography using a Bayesian skyline plot implemented in BEAST.
MSN: Construction of minimum spanning networks using PopART.
BMS: Testing association between genetic diversity indices and biological traits by Bayesian Model Averaging using the R package 'bms'.
PCF: Testing association between phylogeographic patterns and bilogical traits using Phylogeographic Concordance Factors.
See readme.txt in the folder for each analysis for more detail.