Local versus broad scale environmental drivers of continental beta diversity patterns in subterranean spider communities across Europe
Cite this dataset
Mammola, Stefano et al. (2019). Local versus broad scale environmental drivers of continental beta diversity patterns in subterranean spider communities across Europe [Dataset]. Dryad. https://doi.org/10.5061/dryad.qz612jm8z
Abstract
Methods
We compiled what we believe to be the first continental-scale geo-referenced dataset of subterranean spider communities across Europe. The dataset comprises data from 475 caves from 27 European countries, and covers a latitudinal range from 35° to 70°. In constructing the dataset, we deliberately choose caves for which we deemed the spider fauna to be exhaustively known and for which the morphological and environmental features were available, thus minimizing the number of missing data (‘NA’) in the dataset. Although we acknowledge that different sampling bias exists when it comes to estimate the diversity of species within subterranean habitats, by selecting only well-studied caves we assumed the sampling bias to be homogeneous within the caves included in the dataset. We associated high-resolution data to each cave, namely spider community composition along with information on local geomorphological and environmental features. The full dataset will be made available in a datapaper that is currently under review:
Mammola S, Cardoso P, Angyal D, Balázs G, Blick T, Brustel H, Carter J, Ćurčić S, Danflous S, Dányi D, Déjean S, Deltshev C, Elverici M, Fernández J, Gasparo F, Komnenov M, Komposch C, Kováč L, Kunt K B, Mock A, Moldovan O T, Naumova M, Pavlek M, Prieto C E, Ribera C, Rozwałka R, Růžička V, Vargovitsh R S, Zaenker S, Isaia M. Continental data on cave-dwelling spider communities across Europe (Arachnida: Araneae). Biodivers. Data J., submitted.
Here, we upload the databases elaborated for performing Generalized Dissimilarity Modellingin R, namelysite-by-environment (data_env.txt), and site-by-species matrices for troglophile (data_troglophiles.txt) and troglobiont (data_troglobionts.txt ) spiders, as well as the R code for generating the analyses (R_code.r).
Usage notes
Datasets:
-data_env.txt =Environmental predictors formatted for generalized dissimilarity modeling.
-data_troglophiles.txt = ‘gdm’ Site-Pair Table for troglophiles.
-data_troglobionts.txt = ‘gdm’ Site-Pair Table for troglobionts.
Data are provide as tab-delimited txt. Please refer to the main publication for a full description of the variables (Appendix S1) and analyses (Appendix S2).
Codes:
R_code.r = R code for generating the analyses.