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Data from: How far can I extrapolate my species distribution model? Exploring Shape, a novel method

Velazco, Santiago José Elías1; Rose, M. Brooke2; De Marco Jr., Paulo3; Regan, Helen M.2; Franklin, Janet4

Published Oct 31, 2023 on Dryad. https://doi.org/10.5061/dryad.r2280gbk5

Data files

Oct 31, 2023 version files 354.50 MB

Abstract

Species distribution and ecological niche models (hereafter SDMs) are popular tools with broad applications in ecology, biodiversity conservation, and environmental science. Many SDM applications require projecting models in environmental conditions non-analog to those used for model training (extrapolation), giving predictions that may be statistically unsupported and biologically meaningless. We introduce a novel method, Shape, a model-agnostic approach that calculates the extrapolation degree for a given projection data point by its multivariate distance to the nearest training data point. Such distances are relativized by a factor that reflects the dispersion of the training data in environmental space. Distinct from other approaches, Shape incorporates an adjustable threshold to control the binary discrimination between acceptable and unacceptable extrapolation degrees. We compared Shape’s performance to five extrapolation metrics based on their ability to detect analog environmental conditions in environmental space and improve SDMs suitability predictions. To do so, we used 760 virtual species to define different modeling conditions determined by species niche tolerance, distribution equilibrium condition, sample size, and algorithm. All algorithms had trouble predicting species niches. However, we found a substantial improvement in model predictions when model projections were truncated independently of extrapolation metrics. Shape’s performance was dependent on extrapolation threshold used to truncate models. Because of this versatility, our approach showed similar or better performance than the previous approaches and could better deal with all modeling conditions and algorithms. Our extrapolation metric is simple to interpret, captures the complex shapes of the data in environmental space, and can use any extrapolation threshold to define whether model predictions are retained based on the extrapolation degrees. These properties make this approach more broadly applicable than existing methods for creating and applying SDMs. We hope this method and accompanying tools support modelers to explore, detect, and reduce extrapolation errors to achieve more reliable models.