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Dryad

Phylogenomics resolves timing and patterns in the evolution of Australasian Cerambycinae (Coleoptera: Cerambycidae), and reveals new insights into the subfamily-level classification and historical biogeography of longhorn beetles

Cite this dataset

Jin, Mengjie et al. (2022). Phylogenomics resolves timing and patterns in the evolution of Australasian Cerambycinae (Coleoptera: Cerambycidae), and reveals new insights into the subfamily-level classification and historical biogeography of longhorn beetles [Dataset]. Dryad. https://doi.org/10.5061/dryad.rjdfn2zct

Abstract

Cerambycinae is the second-largest subfamily of longhorn beetles in the Southern Hemisphere. The phylogeny of Cerambycinae is poorly known, resulting in a highly artificial tribal-level classification and a largely speculative evolutionary history. We reconstructed the phylogenetic relationships of Cerambycinae at the generic level using anchored hybrid enrichment data from hundreds of nuclear genes, with a primary focus on the extraordinarily diverse faunas of Australia and New Zealand. We also estimated divergence times by incorporating fossil calibrations in our analyses. We identified two main clades within Cerambycinae, which can also be separated morphologically by a distinct type of antennal foramen. We recovered a Late Jurassic origin of crown Cerambycinae. Dorcasominae, which was newly found to have representatives in Australia, was notably derived from within Cerambycinae. We recovered two independent origins of Australian Cerambycinae: one clade originated in the Early Cretaceous and is likely endemic to the Southern Hemisphere, while the other clade appears to have immigrated to Australia, perhaps from the Northern Hemisphere. Within the Australian lineages were multiple independent origins of New Zealand taxa, all of which are relative host-plant generalists. Tribal relationships and assignments are discussed and, based on our results, the following major nomenclatural acts were made: Dorcasominae Lacordaire, 1868, is downgraded to a tribe Dorcasomini of Cerambycinae Latreille, 1804; Neostenini Lacordaire, 1868 syn. nov. is treated as a junior synonym of Uracanthini Blanchard, 1851.

Methods

Our taxon sample was designed with a focus on the faunas of Australia and New Zealand. Ethanol-preserved specimens of Cerambycinae deposited in the Australian National Insect Collection (ANIC) and the New Zealand Arthropod Collection (NZAC) comprised most specimens studied. Genomic DNA was extracted from thoracic muscle, normalized to 100–500 ng of DNA, and sheared to 300–500 bp in size. Hybrid enrichment was performed following the myBaits Hybridization Capture for Targeted NGS protocol (Arbor Biosciences); the AHE probes were designed for Coleoptera by Haddad et al. (2018). 

Funding

Australian Government Australian Biological Resources Study

Ministry of Business, Innovation and Employment

National Science Foundation

Department of Agriculture, Water and the Environment, Australian Government