Bioclimatic data for native- and introduced-range localities of Polygonum cespitosum
Cite this dataset
Woods, Ellen (2022). Bioclimatic data for native- and introduced-range localities of Polygonum cespitosum [Dataset]. Dryad. https://doi.org/10.5061/dryad.rv15dv493
Abstract
To characterize P. cespitosum's climatic distribution, principal component analyses of temperature- and precipitation-related variables were conducted using bioclimatic data extracted (from WorldClim) for species occurrence data.
Methods
Persicaria longiseta (=Polygonum cespitosum s.l.) locality data include sample populations and species occurrences retrieved from GBIF.org. GBIF occurrence data were restricted to specimen-based records (i.e., herbarium specimens) containing latitude/longitude coordinates and/or specimen images. The original GBIF occurrence data are accessible here: GBIF.org (11th September 2018) GBIF Occurrence Download https://doi.org/10.15468/dl.cguuid
Occurrence records lacking location coordinates were manually georeferenced according to locality descriptions provided that the radius of uncertainty was <15 km. The data were subset horizontally (to contain only records with coordinates) and vertically (to include only four columns: gbif id, country code, latitude, and longitude). These data were concatenated with sample population location information. Bioclimatic data were extracted from WorldClim (Fick & Hijmans 2017) for locality coordinates at 2.5 spatial resolution using the raster package in R v.3.6.1.
Fick, S.E. and R.J. Hijmans, 2017. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology.
Usage notes
MISSING VALUES
Missing values are denoted with periods ("."). For these coordinates, bioclimatic data was not returned from the raster package function: getData.
COLUMN DEFINITIONS
Identifying information…
gbif.id = a unique id supplied by GBIF that can be cross-referenced with the original occurrence data
collection.site = whether the row corresponds to a collection site, a.k.a. sample population (“yes”) or a GBIF occurrence record (“no”)
site.id = the abbreviated name of the collection site/sample population (e.g. WAD)
country.code = the country of the locality; country codes are defined by GBIF
manually.georeferenced = whether the location coordinates were manually georeferenced (“yes) or not (“no”)
Location coordinates…
longitude = longitudinal coordinate (decimal degrees)
latitude = latitudinal coordinate (decimal degrees)
Worldclim bioclimatic variables…
bio1 = Annual Mean Temperature
bio2 = Mean Diurnal Range (Mean of monthly (max temp - min temp))
bio3 = Isothermality (bio2/bio7) (×100)
bio4 = Temperature Seasonality (standard deviation ×100)
bio5 = Max Temperature of Warmest Month
bio6 = Min Temperature of Coldest Month
bio7 = Temperature Annual Range (bio5-bio6)
bio8 = Mean Temperature of Wettest Quarter
bio9 = Mean Temperature of Driest Quarter
bio10 = Mean Temperature of Warmest Quarter
bio11 = Mean Temperature of Coldest Quarter
bio12 = Annual Precipitation
bio13 = Precipitation of Wettest Month
bio14 = Precipitation of Driest Month
bio15 = Precipitation Seasonality (Coefficient of Variation)
bio16 = Precipitation of Wettest Quarter
bio17 = Precipitation of Driest Quarter
bio18 = Precipitation of Warmest Quarter
bio19 = Precipitation of Coldest Quarter
For more information on bioclimatic variables, see:
Fick, S.E. and R.J. Hijmans, 2017. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology.
Funding
National Science Foundation
Explorers Club
Center for Conservation and Biodiversity
Wesleyan University
University of Connecticut