Extensive in situ radiation of feather lice on tinamous
Cite this dataset
Virrueta Herrera, Stephany et al. (2020). Extensive in situ radiation of feather lice on tinamous [Dataset]. Dryad. https://doi.org/10.5061/dryad.s1rn8pk4b
Abstract
Usage notes
The concatentated data matrix created using SequenceMatrix.
tinamou_concat_nexus_naked.phy
Tinamou Louse IQ Tree consensus tree file.
tinamou_concat_nexus_naked.phy.contree
Gene tree files from nuclear data, all trees were estimated in RAxML.
gene_trees.zip
Tinamou Louse gene alignment files
gene_alignements.zip
ASTRAL output tree
Tinamou_ASTRAL.tree
Maximum likelihood tree RAxML output
RAxML_bipartitions.tinamou_concatenated.tree
Maximum likelihood tree with partitions RAxML output and PartitionFinder best scheme output
RAxML_bipartitions.Tinamou_concat_with_partitions.tree
Tinamou_partitions_best_scheme.txt
Maximum likelihood tree after Degen recoding analysis RAxML output
RAxML_bipartitions.tinamou_recoding.tree
Funding
National Science Foundation, Award: DEB-1239788
National Science Foundation, Award: DEB-1342604
National Science Foundation, Award: DEB-1855812