Tropical ectotherms are thought to be especially vulnerable to climate change because they are thermal specialists, having evolved in aseasonal thermal environments. However, even within the tropics, habitat structure can influence opportunities for behavioral thermoregulation. Open (and edge) habitats likely promote more effective thermoregulation due to the high spatial heterogeneity of the thermal landscape, while forests are thermally homogenous and may constrain opportunities for behavioral buffering of environmental temperatures. Nevertheless, the ways in which behavior and physiology interact at local scales to influence the response to climate change are rarely investigated. We examined the thermal ecology and physiology of two lizard species that occupy distinct environments in the tropics. The brown anole lizard (Anolis sagrei) lives along forest edges in The Bahamas, whereas the Panamanian slender anole (Anolis apletophallus) lives under the canopy of mature forests in Panama. We combined detailed estimates of environmental variation, thermoregulatory behavior, and physiology to model the vulnerability of each of these species. Our projections suggest that forest-dwelling slender anoles will experience severely reduced locomotor performance, activity time, and energy budgets as the climate warms over the coming century. Conversely, the forest-edge dwelling brown anoles may use behavioral compensation in the face of warming, maintaining population viability for many decades. Our results indicate that local habitat variation, through its effects on behavior and physiology, is a major determinant of vulnerability to climate change. When attempting to predict the impacts of climate change on a given population, broad-scale characteristics such as latitude may have limited predictive power.

Please see the methods section of the published manuscript

This Neel_Anole_Biotropica_readme.txt file was generated on 2021-03-29 by Lauren Neel

GENERAL INFORMATION

1. Title of manuscript: Habitat structure mediates vulnerability to climate change through its effects on thermoregulatory behavior

2. Author Information
    A. Lead Author Contact Information
        Name: Lauren Neel
        Institution: Arizona State University 
        Address: Tempe, AZ, USA
        Email: lkneel@asu.edu

    B. Associate or Co-investigator Contact Information
        Name: Mike Logan
        Institution: University Nevada - Reno
        Address: Reno, NV, USA
        Email: mike.logan1983@gmail.com

3. Date of data collection (single date, range, approximate date): Please see Table S1 in the manuscript for this detailed information.

4. Geographic location of data collection: 
    1. Great Exuma, The Bahamas 
    2. Gamboa, Panama

5. Information about funding sources that supported the collection of the data: 

Our methods were approved by the Smithsonian Tropical Research Institute Institutional Animal Care and Use Committee (protocol 2017-0308-2020-A5), Harvard University Institutional Animal Care and Use Committee (protocol 26-11), MiAmbiente research permit SE/A-37-19, and the BEST commission research permit. Funding for this project was provided by a USAID Global Development Research Fellowship awarded to L. Neel, a STRI-ASU Collaborative Initiative Research Grant awarded to L. Neel and M. Logan, a Smithsonian Institution Biodiversity Genomics Postdoctoral Fellowship awarded to M. Logan, a Smithsonian Tropical Research Institute Earl S. Tupper Postdoctoral Fellowship awarded to M. Logan,  a NERC studentship (NE/L002485/1) awarded to D. Nicholson, a Smithsonian Pre-Doctoral Fellowship awarded to D. Nicholson, a STRI Short-Term Fellowship awarded to A. Chung, Georgia Southern University Graduate Student Organization Professional Development grants awarded to A. Chung and J. Curlis, American Museum of Natural History Theodore Roosevelt grants awarded to A. Chung and J. Curlis, and a John Templeton Foundation grant awarded to J. Losos (the opinions expressed in this publication are those of the authors and do not necessarily reflect the views of the John Templeton Foundation). The authors thank Lil Camacho, Adriana Bilgray, Paola Gomez, and Raineldo Urriola for administrative support at STRI. 

SHARING/ACCESS INFORMATION

1. Licenses/restrictions placed on the data: n/a

2. Links to publications that cite or use the data: n/a

3. Links to other publicly accessible locations of the data: n/a

4. Links/relationships to ancillary data sets: n/a

5. Was data derived from another source? no

DATA & FILE OVERVIEW

1. File List: 

    "2017-2018 Panama and Bahamas CTmin UVT.csv" - file containing thermal tolerance data
    "activity_time_model_panama.xlsx" - file containing modeled body temperature data for Panama, generated using regression equation from present day body temperature (Tb) and operative temperature (Te) data. Body temps modeled for a 3C warming event occurring over 100 years. Activity is assumed to be possible whenever Tb is below upper voluntary temperatures. 
    "activity_time_model_bahamas.xlsx" - file containing modeled body temperature data for The Bahamas, generated using regression equation from present day body temperature (Tb) and operative temperature (Te) data. Body temps modeled for a 3C warming event occurring over 100 years. Activity is assumed to be possible whenever Tb is below upper voluntary temperatures. 
    "Anole Mainland Tb.csv" - field active body temperature data
    "combined mainland data sheet.csv" - file containing Tb and Te when captured, thermal tolerance, field data, mass, svl
    "combined mainland Tpref.csv" - file containing more detailed thermal preference data
    "metabolism.csv" - file containing lizard sex, mass, oxygen consumed, trial temperature, and calculated Q10 values
    "MR modeling panama.xlsx" - file containing modeled body temperature data and oxygen consumption for 3C warming event, assuming current relationship between metabolism and temperature in Panama
    "MR modeling bahamas.xlsx" - file containing modeled body temperature data and oxygen consumption for 3C warming event, assuming current relationship between metabolism and temperature in The Bahamas
    "Sprint projection panama.xlsx" - file containing modeled body temperature data and sprint speeds for 3C warming event, assuming current relationship between locomotor performance and temperature in Panama
    "Sprint projection bahamas.xlsx" - file containing modeled body temperature data and sprint speeds for 3C warming event, assuming current relationship between locomotor performance and temperature in The Bahamas
    "sprint_thermal_sensitivity.csv" - file containing thermal sensitivity of locomotor performance data
    "TbTe_andmass.xlsx" - file containing lizard mass, Tb when caught, and average Te when caught. Regression equation from Tb plotted as function of Te retained to incorporate thermoregulation when modeling body temperatures under 3C warming scenario. 
    "Hourly_Te.xlsx" - file containing summary hourly operative environmental data 
    "daily_nightly_summary_Te.xlsx" - daily and nightly summary operative environmental data
    "monthly weather station data bahamas.xlsx" - monthly weather station air temperature data in the Bahamas
    "monthly weather station data panama.xlsx" - monthly weather station air temperature data in Panama

2. Relationship between files, if important: n/a

3. Additional related data collected that was not included in the current data package: no

4. Are there multiple versions of the dataset? no
    A. If yes, name of file(s) that was updated: 
        i. Why was the file updated? 
        ii. When was the file updated? 

METHODOLOGICAL INFORMATION

1. Description of methods used for collection/generation of data: 
Please read the full materials and methods section of our manuscript for this detailed information. 

2. Methods for processing the data: 
Please read the full materials and methods section of our manuscript for this detailed information. 

3. Instrument- or software-specific information needed to interpret the data: 
Model comparisons were conducted with the MUMIN package in R version 3.6.2 (R Core Team 2020). 

4. Standards and calibration information, if appropriate: n/a

5. Environmental/experimental conditions: n/a

6. Describe any quality-assurance procedures performed on the data: n/a

7. People involved with sample collection, processing, analysis and/or submission: all authors were involved with some combination of these items.

DATA-SPECIFIC INFORMATION FOR: [2017-2018 Panama and Bahamas CTmin UVT.csv]

1. Number of variables: 4

2. Number of cases/rows: 1909

3. Variable List: 
<list variable name(s), description(s), unit(s)and value labels as appropriate for each>
Country - population of individual sampled
Year - year data collected
Ctmin - critical thermal minima (C)
UVT - upper voluntary temperature (C)

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [activity_time_model_panama.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 4

2. Number of cases/rows: 82

3. Variable List: 
Hours active - total number annual hours where predicted Tb was within preferred thermal range (CTmin - UVT) 
Year - year data modeled
Daily hours - total number daily hours where predicted Tb was within preferred thermal range (CTmin - UVT) 
% annual hours - percentage of annual hours where predicted Tb within preferred thermal range

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [activity_time_model_bahamas.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 4

2. Number of cases/rows: 82

3. Variable List: 
Hours active - total number annual hours where predicted Tb was within preferred thermal range (CTmin - UVT) 
Year - year data modeled
Daily hours - total number daily hours where predicted Tb was within preferred thermal range (CTmin - UVT) 
% annual hours - percentage of annual hours where predicted Tb within preferred thermal range

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [Anole Mainland Tb.csv]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 4

2. Number of cases/rows: 1426

3. Variable List: 
Lizard ID - Lizard identifier
Date capture - date sampled
Capture_site - population 
Tb - field active body temperature (C) 

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [combined mainland data sheet.csv]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 11

2. Number of cases/rows: 2013

3. Variable List: 
Lizard ID - Lizard identifier
Country - population of individual sampled
Year - year data collected
Timecaptured - time animal captured
Tb - field active body temp (C)
Te - average operative temperature (C) at time lizard caught
CTmin - lower thermal limit (C)
UVT - upper voluntary thermal limit (C)
Sex - sex m/f
Mass_g - mass (g)
SVL_mm - Snout vent length (mm)

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [combined mainland Tpref.csv]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 17

2. Number of cases/rows: 120

3. Variable List: 
Country - population of individual sampled
Trial date - date of trial
Time trial began - trial start time
Lizard ID - Lizard identifier
Mass - mass (g)
SVL_mm - Snout vent length (mm)
Sex - sex m/f
Tpref_mean - mean thermal preference (C)
Tpref_median - median thermal preference (C)
Tpref_min - min thermal preference (C)
Tpref_max - max thermal preference (C)
Tpref_range - range of thermal preference (C)
Tpref_StdDev - standard deviation of preferred temps (C)
Tpref_25thq - 25th quartile of thermal preference (C)
Tpref_75thq - 25th quartile of thermal preference (C)
IQR - interquartile range (C)
TC # - thermocouple number

4. Missing data codes: 
N/a - means data type were not collected from that individual. 
? - means data weren't collected for unknown reasons.

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [metabolism.csv]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 9

2. Number of cases/rows: 145

3. Variable List: 
Lizard - Lizard identifier
Country - population of individual sampled
Year - year data collected
Sex - sex m/f
Mass - mass (g)
Total o2 consumed per hourly - total hourly oxygen consumed 
Temp - trial temperature (C)
Q10 - calculated Q10 value
LH - low/high temp.. used to code in stats

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [MR modeling bahamas.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 7

2. Number of cases/rows: 82

3. Variable List: 
Te - average annual operative temperature incorporating 3C uniform warming scenario occurring through century's end
Year - year 
Predicted Tb - predicted body temperature (C) given operative temperature under warming scenario, adjusted to incorporate thermoregulation (via function from Tb Te regression)
Predicted VO2 - predicted oxygen consumption (ml O2/ gram animal / time ) using current relationship between metabolism and temperature
EE - annual energy expenditure (kilocalorie/hour)
EE - annual energy expenditure (kilojoule/hour)
EE annual - annual energy expenditure assuming animal is active 12 hr/day

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [MR modeling panama.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 7

2. Number of cases/rows: 82

3. Variable List: 
Te - average annual operative temperature incorporating 3C uniform warming scenario occurring through century's end
Year - year 
Predicted Tb - predicted body temperature (C) given operative temperature under warming scenario, adjusted to incorporate thermoregulation (via function from Tb Te regression)
Predicted VO2 - predicted oxygen consumption (ml O2/ gram animal / time ) using current relationship between metabolism and temperature
EE - annual energy expenditure (kilocalorie/hour)
EE - annual energy expenditure (kilojoule/hour)
EE annual - annual energy expenditure assuming animal is active 12 hr/day

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [Sprint projection bahamas.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 3

2. Number of cases/rows: 82

3. Variable List: 
Year - year 
Predicted Tb - predicted body temperature (C) given operative temperature under warming scenario, adjusted to incorporate thermoregulation (via function from Tb Te regression)
Predicted relative performance - predicted relative locomotor performance (meter/second) using current relationship between locomotion and temperature

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [Sprint projection panama.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 3

2. Number of cases/rows: 82

3. Variable List: 
Year - year 
Predicted Tb - predicted body temperature (C) given operative temperature under warming scenario, adjusted to incorporate thermoregulation (via function from Tb Te regression)
Predicted relative performance - predicted relative locomotor performance (meter/second) using current relationship between locomotion and temperature

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [Sprint_thermal_sensitivity.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 6

2. Number of cases/rows: 65

3. Variable List: 
Lizard # - Lizard identifier
Topt - thermal optima for locomotor performance (C)
Pmax - maximum locomotor performance (m/s)
Mass - mass (g)
Country - population of individual sampled

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [TbTe_andmass.csv]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 8

2. Number of cases/rows: 692

3. Variable List: 
Lizard ID - Lizard identifier
Time - time lizard sampled
Date - date lizard sampled
Mass - mass (g) of lizard
Tb - field active body temperature (C)
Te - operative environmental temperature (C) at time lizard caught
#OTMS averaged - the number of operative temperature models that went in to averaged Te value
Country - population of individual sampled

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [Hourly_Te.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 5

2. Number of cases/rows: 25

3. Variable List: 
Site - location 
Hour - hour data collected
Temp median - median operative temperature (C)
Se - standard error of operative temperature

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [daily_nightly_summary_Te.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 3

2. Number of cases/rows: 178

3. Variable List: 
Te - operative temperature (C)
Category - min/max/mean
Country - country sampled

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [monthly weather station data bahamas.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 3

2. Number of cases/rows: 178

3. Variable List: 
Date - date temp taken
Temp - weather station air temp (C)
Month - month data sampled 

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a

DATA-SPECIFIC INFORMATION FOR: [monthly weather station data panama.xlsx]
<repeat this section for each dataset, folder or file, as appropriate>

1. Number of variables: 3

2. Number of cases/rows: 178

3. Variable List: 
Date - date temp taken
Temp - weather station air temp (C)
Month - month data sampled 

4. Missing data codes: 
N/a - means data type were not collected from that individual. 

5. Specialized formats or other abbreviations used: 
N/a