Data from: Illuminating T cell-dendritic cell interactions in vivo by FlAsHing antigens
Data files
Jan 09, 2024 version files 8.05 GB
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041819_imaging-_PAPER_3e-h.pzfx
558.93 KB
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6U1A28_1.FCS
482.80 KB
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6U353A_1.FCS
482.80 KB
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6UB6C3_1.FCS
482.80 KB
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6UBA70_1.FCS
482.80 KB
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6UEB09_1.FCS
482.80 KB
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6UMFLA_2.FCS
482.80 KB
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b-r_coloc_FOR_FLOWJO.fcs
22.77 KB
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Dryad_file_directory.txt
5.27 KB
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EA86CC_1.FCS
180.50 MB
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EAE1C0_1.FCS
127.49 MB
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EAE873_1.FCS
1.73 MB
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FINAL_Fig_6.pzfx
36.92 KB
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FL0877_1.FCS
668.10 KB
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FL528B_1.FCS
3.34 MB
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FL59C9_1.FCS
1.61 MB
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FL5A50_1.FCS
3.55 MB
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FL5FAA_1.FCS
3.54 MB
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FL6FB4_1.FCS
1.85 MB
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FL9A8D_1.FCS
6.23 MB
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Flash_MS_Fig_4.pzfx
15.76 KB
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Flash_MS_Fig_5.pzfx
22.52 KB
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FlAsH-ReAsH_122418_Tube_003_009.fcs
5.48 MB
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FlAsH-ReAsH_122418_Tube_005_011.fcs
2.59 MB
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FlAsH-ReAsH_122418_Tube_006_012.fcs
2.38 MB
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FlAsH-ReAsH_122418_Tube_009_015.fcs
1.65 MB
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FlAsH-ReAsH_122418_Tube_011_017.fcs
1 MB
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FlAsH-ReAsH_122418_Tube_012_018.fcs
1.06 MB
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FlAsH-ReAsH_122418_Tube_017_023.fcs
1.14 MB
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FlAsH-ReAsH_122418_Tube_023_029.fcs
1.27 MB
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m-r_coloc_FOR_FLOWJO.fcs
22.83 KB
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MHC_KO_imaging.pzfx
160.89 KB
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MS1WHO_1.IMS
110.91 MB
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MS2WHO_1.IMS
131.33 MB
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No_antigen-2.fcs
26.87 KB
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OTII_in_vivo_Day_1_030818_Tube_005_015.fcs
841.29 MB
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OTII_in_vivo_Day_2_030918_Tube_005_005.fcs
788.44 MB
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OVA-2.fcs
21.80 KB
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OVA-Biotin_021318_Tube_003_003.fcs
52.62 MB
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OVACACA-2.fcs
27.86 KB
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PAPER-Fig5_e-f.pzfx
12.72 MB
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PAPERF_1.PZF
26.65 KB
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proliferation_day_3_Tube_001_001.fcs
412.94 KB
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proliferation_day_3_Tube_014_014.fcs
250.99 KB
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proliferation_day_3_Tube_015_015.fcs
188.89 KB
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proliferation_day_3_Tube_018_018.fcs
180.99 KB
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proliferation_day_3_Tube_020_020.fcs
191.23 KB
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proliferation_day_3_Tube_022_022.fcs
188.83 KB
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R_Sec_2_1h_20min_.ims
5.74 GB
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README.md
6.55 KB
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Specimen_001_Tube_002_009.fcs
1.93 MB
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Specimen_001_Tube_004_011.fcs
2.25 MB
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Specimen_001_Tube_009_016.fcs
4.77 MB
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Specimen_001_Tube_011_018.fcs
721 KB
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Specimen_001_Tube_013_020.fcs
924.17 KB
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Specimen_001_Tube_016_023.fcs
1.20 MB
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WTVSMH_1.FCS
4.89 MB
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WTVSMH_2.FCS
4.97 MB
Abstract
Delineating the complex network of interactions between antigen-specific T cells and antigen presenting cells (APCs) is crucial for effective precision therapies against cancer, chronic infections, and autoimmunity. However, the existing arsenal for examining antigen-specific T cell interactions is restricted to a select few antigen-T cell receptor pairs, with limited in situ utility. This lack of versatility is largely due to the disruptive effects of reagents on the immune synapse, which hinder real-time monitoring of antigen-specific interactions. To address this limitation, we have developed a novel and versatile immune monitoring strategy by adding a short cysteine-rich tag to antigenic peptides that emits fluorescence upon binding to thiol-reactive biarsenical hairpin compounds. Our findings demonstrate the specificity and durability of the novel antigen-targeting probes during dynamic immune monitoring in vitro and in vivo. This strategy opens new avenues for biological validation of T-cell receptors with newly identified epitopes by revealing the behavior of previously unrecognized antigen-receptor pairs, expanding our understanding of T cell responses.
README: Illuminating T cell-dendritic cell interactions in vivo by FlAsHing antigens
https://doi.org/10.5061/dryad.v15dv4239
Give a brief summary of dataset contents, contextualized in experimental procedures and results.
Description of the data and file structure
The flow cytometry and imaging data for the Figures 1-6 are deposited here as fcs, ims and pzfx files. The files are:
Filename | File type | Figure | Experimental Condition |
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6UBA70_1.FCS | fcs | 1b | OVA |
6U1A28_1.FCS | fcs | 1b | C variant |
6UMFLA_2.FCS | fcs | 1b | N variant |
6U353A_1.FCS | fcs | 1b | CACA |
6UEB09_1.FCS | fcs | 1b | NACA |
6UB6C3_1.FCS | fcs | 1b | DC-unpulsed |
FL0877_1.FCS | fcs | 1c | No Antigen |
FL59C9_1.FCS | fcs | 1c | Native peptide |
FL6FB4_1.FCS | fcs | 1c | Variant peptide |
FL5A50_1.FCS | fcs | 1c | No Antigen + TCEP |
FL528B_1.FCS | fcs | 1c | Native peptide + TCEP |
FL5FAA_1.FCS | fcs | 1c | Variant peptide + TCEP |
proliferation_day_3_Tube_001_001.fcs | fcs | 2a-d | No antigen |
proliferation_day_3_Tube_015_015.fcs | fcs | 2a-d | C-variant |
proliferation_day_3_Tube_014_014.fcs | fcs | 2a-d | Native peptide |
proliferation_day_3_Tube_018_018.fcs | fcs | 2a-d | N-variant |
proliferation_day_3_Tube_020_020.fcs | fcs | 2a-d | CACA-variant |
proliferation_day_3_Tube_022_022.fcs | fcs | 2a-d | NACA-variant |
No_antigen-2.fcs | fcs | 2f | No Antigen |
OVA-2.fcs | fcs | 2f | OVA |
OVACACA-2.fcs | fcs | 2f | OVACACA |
b-r_coloc_FOR_FLOWJO.fcs | fcs | 3g | OTII |
m-r_coloc_FOR_FLOWJO.fcs | fcs | 3g | Polyclonal |
R_Sec_2_1h_20min_.ims | ims | 5d | Refer to the figure |
MS1WHO_1.IMS | ims | 4g | MHCII KO + WT |
MS2WHO_1.IMS | ims | 4g | MHCI/II DKO + WT |
WTVSMH_1.FCS | fcs | 3e | MHCII KO + WT |
Flash_MS_Fig_4.pzfx | pzfx | 3f | analysis file |
WTVSMH_2.FCS | fcs | 3e | MHCI/II DKO + WT |
OVA-Biotin_021318_Tube_003_003.fcs | fcs | 4b | Refer to the figure |
OTII_in_vivo_Day_1_030818_Tube_005_015.fcs | fcs | 3b | Refer to the figure |
OTII_in_vivo_Day_2_030918_Tube_005_005.fcs | fcs | 3b,c | Refer to the figure |
FlAsH-ReAsH_122418_Tube_003_009.fcs | fcs | 1d | Native peptide |
FlAsH-ReAsH_122418_Tube_009_015.fcs | fcs | 1d | Variant peptide |
FlAsH-ReAsH_122418_Tube_006_012.fcs | fcs | 1d | Native peptide + ReAsH |
FlAsH-ReAsH_122418_Tube_012_018.fcs | fcs | 1d | Variant peptide + ReAsH |
FlAsH-ReAsH_122418_Tube_005_011.fcs | fcs | 1e | native peptide |
FlAsH-ReAsH_122418_Tube_011_017.fcs | fcs | 1e | CACA-variant |
FlAsH-ReAsH_122418_Tube_017_023.fcs | fcs | 1e | CACA-2xTetracysteine |
FlAsH-ReAsH_122418_Tube_023_029.fcs | fcs | 1e | CACA-BAL resistant |
PAPERF_1.PZF | pzf | 2g | analysis file |
041819_imaging-_PAPER_3e-h.pzfx | pzfx | 3 e,h | analysis file |
FL9A8D_1.FCS | fcs | 4c | Refer to the figure |
MHC_KO_imaging.pzfx | pzfx | 4h | analysis file |
EAE873_1.FCS | fcs | 4b | No antigen |
EAE1C0_1.FCS | fcs | 4b | OVACACA |
EA86CC_1.FCS | fcs | 4b | OVACACA + Eα(52-68) |
Flash_MS_Fig_5.pzfx | pzfx | 4c | analysis file |
PAPER-Fig5_e-f.pzfx | pzfx | 5e,f | analysis file |
Specimen_001_Tube_002_009.fcs | fcs | 6c-e | No peptide |
Specimen_001_Tube_004_011.fcs | fcs | 6c-e | OVA |
Specimen_001_Tube_009_016.fcs | fcs | 6c-e | OVACACA |
Specimen_001_Tube_011_018.fcs | fcs | 6c-e | Variant 1 |
Specimen_001_Tube_013_020.fcs | fcs | 6c-e | Variant 2 |
Specimen_001_Tube_016_023.fcs | fcs | 6c-e | Variant 3 |
FINAL_Fig_6.pzfx | pzfx | 6d,e | analysis file |
Code/Software
Flow Jo is the recommended software for the fcs files, Imaris is the recommended software for imaging files. Graphpad prism is the ideal software to view pzfx files.
Methods
The dataset was collected from flow cytometry and dynamic two photon imaging. The raw data are being deposited here.