White shark diet sequences and sequence library
Data files
Aug 14, 2023 version files 24.13 GB
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107WA_S180_L001_R1_001.fastq.gz
10.82 MB
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107WA_S180_L001_R2_001.fastq.gz
13.45 MB
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116WA_S181_L001_R1_001.fastq.gz
10.84 MB
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116WA_S181_L001_R2_001.fastq.gz
13.32 MB
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190WA_S182_L001_R1_001.fastq.gz
6.77 MB
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190WA_S182_L001_R2_001.fastq.gz
7.29 MB
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207WAA_S183_L001_R1_001.fastq.gz
3.53 MB
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207WAA_S183_L001_R2_001.fastq.gz
3.72 MB
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214WA_S184_L001_R1_001.fastq.gz
13.55 MB
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214WA_S184_L001_R2_001.fastq.gz
16.97 MB
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250WA_S185_L001_R1_001.fastq.gz
11.40 MB
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250WA_S185_L001_R2_001.fastq.gz
13.94 MB
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285WA_S186_L001_R1_001.fastq.gz
10.74 MB
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285WA_S186_L001_R2_001.fastq.gz
12.96 MB
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294WA_S187_L001_R1_001.fastq.gz
9.38 MB
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294WA_S187_L001_R2_001.fastq.gz
11.61 MB
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310WA_S188_L001_R1_001.fastq.gz
10.72 MB
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310WA_S188_L001_R2_001.fastq.gz
13.02 MB
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324WA_S192_L001_R1_001.fastq.gz
10.97 MB
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324WA_S192_L001_R2_001.fastq.gz
13.78 MB
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330WA_S193_L001_R1_001.fastq.gz
3.83 MB
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330WA_S193_L001_R2_001.fastq.gz
3.92 MB
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330WAA_S194_L001_R1_001.fastq.gz
6.89 MB
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330WAA_S194_L001_R2_001.fastq.gz
7.81 MB
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343WA_S195_L001_R1_001.fastq.gz
10.33 MB
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343WA_S195_L001_R2_001.fastq.gz
13.06 MB
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344WAA_S196_L001_R1_001.fastq.gz
10.60 MB
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344WAA_S196_L001_R2_001.fastq.gz
13.17 MB
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345WA_S197_L001_R1_001.fastq.gz
7.50 MB
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345WA_S197_L001_R2_001.fastq.gz
9.30 MB
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364WA_S198_L001_R1_001.fastq.gz
11.09 MB
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364WA_S198_L001_R2_001.fastq.gz
13.72 MB
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365WAA_S199_L001_R1_001.fastq.gz
11.69 MB
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365WAA_S199_L001_R2_001.fastq.gz
14.78 MB
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366WA_S200_L001_R1_001.fastq.gz
11.86 MB
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366WA_S200_L001_R2_001.fastq.gz
15.51 MB
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369WA_S201_L001_R1_001.fastq.gz
8.18 MB
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369WA_S201_L001_R2_001.fastq.gz
9.30 MB
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380WA_S202_L001_R1_001.fastq.gz
10.11 MB
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380WA_S202_L001_R2_001.fastq.gz
12.07 MB
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385WA_S203_L001_R1_001.fastq.gz
11.68 MB
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385WA_S203_L001_R2_001.fastq.gz
14.25 MB
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385WAA_S204_L001_R1_001.fastq.gz
13.82 MB
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385WAA_S204_L001_R2_001.fastq.gz
17.61 MB
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386WA_S205_L001_R1_001.fastq.gz
10.79 MB
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386WA_S205_L001_R2_001.fastq.gz
13.60 MB
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400WA_S206_L001_R1_001.fastq.gz
10.76 MB
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400WA_S206_L001_R2_001.fastq.gz
13.63 MB
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402WA_S207_L001_R1_001.fastq.gz
12.90 MB
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402WA_S207_L001_R2_001.fastq.gz
15.72 MB
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404W_S1_L001_R1_001.fastq.gz
12.66 MB
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404W_S1_L001_R2_001.fastq.gz
15.44 MB
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405WA_S208_L001_R1_001.fastq.gz
10.98 MB
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405WA_S208_L001_R2_001.fastq.gz
13.56 MB
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406W_S2_L001_R1_001.fastq.gz
12.66 MB
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406W_S2_L001_R2_001.fastq.gz
15.60 MB
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407W_S3_L001_R1_001.fastq.gz
10.52 MB
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407W_S3_L001_R2_001.fastq.gz
12.35 MB
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410W_S4_L001_R1_001.fastq.gz
11.80 MB
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410W_S4_L001_R2_001.fastq.gz
14.13 MB
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411W_S5_L001_R1_001.fastq.gz
12.71 MB
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411W_S5_L001_R2_001.fastq.gz
15.14 MB
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413WA_S209_L001_R1_001.fastq.gz
5.54 MB
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413WA_S209_L001_R2_001.fastq.gz
5.92 MB
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414W_S6_L001_R1_001.fastq.gz
11.95 MB
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414W_S6_L001_R2_001.fastq.gz
14.08 MB
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415W_S7_L001_R1_001.fastq.gz
9.61 MB
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415W_S7_L001_R2_001.fastq.gz
11.41 MB
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416W_S8_L001_R1_001.fastq.gz
13.58 MB
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416W_S8_L001_R2_001.fastq.gz
15.78 MB
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417W_S9_L001_R1_001.fastq.gz
12.42 MB
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417W_S9_L001_R2_001.fastq.gz
14.98 MB
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418W_S10_L001_R1_001.fastq.gz
14.74 MB
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418W_S10_L001_R2_001.fastq.gz
18.05 MB
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419W_S11_L001_R1_001.fastq.gz
13.66 MB
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419W_S11_L001_R2_001.fastq.gz
16.24 MB
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419WA_S210_L001_R1_001.fastq.gz
5.32 MB
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419WA_S210_L001_R2_001.fastq.gz
5.68 MB
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421W_S12_L001_R1_001.fastq.gz
12.59 MB
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421W_S12_L001_R2_001.fastq.gz
14.74 MB
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424W_S13_L001_R1_001.fastq.gz
12.27 MB
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424W_S13_L001_R2_001.fastq.gz
13.86 MB
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424WA_S211_L001_R1_001.fastq.gz
12.63 MB
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424WA_S211_L001_R2_001.fastq.gz
14.43 MB
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425W_S14_L001_R1_001.fastq.gz
13.25 MB
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425W_S14_L001_R2_001.fastq.gz
15.71 MB
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426W_S15_L001_R1_001.fastq.gz
10.71 MB
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426W_S15_L001_R2_001.fastq.gz
13.34 MB
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427W_S16_L001_R1_001.fastq.gz
11.29 MB
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427W_S16_L001_R2_001.fastq.gz
13.67 MB
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428W_S17_L001_R1_001.fastq.gz
10.37 MB
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428W_S17_L001_R2_001.fastq.gz
12.62 MB
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428WA_S212_L001_R1_001.fastq.gz
12.42 MB
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428WA_S212_L001_R2_001.fastq.gz
15.47 MB
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429W_S18_L001_R1_001.fastq.gz
10.11 MB
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429W_S18_L001_R2_001.fastq.gz
12.15 MB
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430W_S19_L001_R1_001.fastq.gz
10.42 MB
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430W_S19_L001_R2_001.fastq.gz
12.40 MB
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430WA_S213_L001_R1_001.fastq.gz
10.10 MB
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430WA_S213_L001_R2_001.fastq.gz
11.79 MB
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434W_S20_L001_R1_001.fastq.gz
6.91 MB
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434W_S20_L001_R2_001.fastq.gz
8.49 MB
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434WA_S214_L001_R1_001.fastq.gz
10.53 MB
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434WA_S214_L001_R2_001.fastq.gz
12.17 MB
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434WAA_S215_L001_R1_001.fastq.gz
7.46 MB
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434WAA_S215_L001_R2_001.fastq.gz
9.14 MB
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435W_S21_L001_R1_001.fastq.gz
9.79 MB
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435W_S21_L001_R2_001.fastq.gz
12.20 MB
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436W_S22_L001_R1_001.fastq.gz
6.51 MB
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436W_S22_L001_R2_001.fastq.gz
7.99 MB
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437W_S23_L001_R1_001.fastq.gz
10.35 MB
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437W_S23_L001_R2_001.fastq.gz
12.94 MB
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437WA_S216_L001_R1_001.fastq.gz
10.67 MB
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437WA_S216_L001_R2_001.fastq.gz
13.50 MB
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438W_S24_L001_R1_001.fastq.gz
10.34 MB
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438W_S24_L001_R2_001.fastq.gz
12.57 MB
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439W_S25_L001_R1_001.fastq.gz
13.15 MB
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439W_S25_L001_R2_001.fastq.gz
17.23 MB
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440W_S26_L001_R1_001.fastq.gz
16.42 MB
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440W_S26_L001_R2_001.fastq.gz
20.42 MB
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441W_S27_L001_R1_001.fastq.gz
10.95 MB
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441W_S27_L001_R2_001.fastq.gz
13.52 MB
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442W_S28_L001_R1_001.fastq.gz
12.59 MB
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442W_S28_L001_R2_001.fastq.gz
15.28 MB
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443W_S29_L001_R1_001.fastq.gz
12.48 MB
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443W_S29_L001_R2_001.fastq.gz
15.78 MB
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444W_S30_L001_R1_001.fastq.gz
14.68 MB
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444W_S30_L001_R2_001.fastq.gz
18.42 MB
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445W_S31_L001_R1_001.fastq.gz
9.82 MB
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445W_S31_L001_R2_001.fastq.gz
12.46 MB
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446W_S33_L001_R1_001.fastq.gz
11.56 MB
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446W_S33_L001_R2_001.fastq.gz
14.06 MB
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448W_S34_L001_R1_001.fastq.gz
11.83 MB
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448W_S34_L001_R2_001.fastq.gz
15.04 MB
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449W_S35_L001_R1_001.fastq.gz
12.97 MB
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449W_S35_L001_R2_001.fastq.gz
15.58 MB
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449W1_S217_L001_R1_001.fastq.gz
7.49 MB
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449W1_S217_L001_R2_001.fastq.gz
8.33 MB
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450W_S36_L001_R1_001.fastq.gz
11.90 MB
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450W_S36_L001_R2_001.fastq.gz
14.45 MB
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450WA_S218_L001_R1_001.fastq.gz
6.03 MB
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450WA_S218_L001_R2_001.fastq.gz
6.45 MB
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452W_S37_L001_R1_001.fastq.gz
10.60 MB
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452W_S37_L001_R2_001.fastq.gz
12.91 MB
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453W_S38_L001_R1_001.fastq.gz
11.49 MB
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453W_S38_L001_R2_001.fastq.gz
13.43 MB
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454W_S39_L001_R1_001.fastq.gz
11.84 MB
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454W_S39_L001_R2_001.fastq.gz
14.52 MB
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455W_S40_L001_R1_001.fastq.gz
12.90 MB
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455W_S40_L001_R2_001.fastq.gz
15.75 MB
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456W_S41_L001_R1_001.fastq.gz
11.03 MB
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456W_S41_L001_R2_001.fastq.gz
14.17 MB
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457W_S42_L001_R1_001.fastq.gz
11.82 MB
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457W_S42_L001_R2_001.fastq.gz
14.24 MB
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458W_S43_L001_R1_001.fastq.gz
3.87 MB
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458W_S43_L001_R2_001.fastq.gz
4.72 MB
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459W_S44_L001_R1_001.fastq.gz
11.58 MB
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459W_S44_L001_R2_001.fastq.gz
14.85 MB
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460W_S45_L001_R1_001.fastq.gz
11.35 MB
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460W_S45_L001_R2_001.fastq.gz
13.91 MB
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461W_S46_L001_R1_001.fastq.gz
11.01 MB
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461W_S46_L001_R2_001.fastq.gz
13.52 MB
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463W_S47_L001_R1_001.fastq.gz
11.78 MB
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463W_S47_L001_R2_001.fastq.gz
14.81 MB
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465W_S48_L001_R1_001.fastq.gz
11.98 MB
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465W_S48_L001_R2_001.fastq.gz
15.25 MB
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468W_S65_L001_R1_001.fastq.gz
11.18 MB
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468W_S65_L001_R2_001.fastq.gz
13.55 MB
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469W_S66_L001_R1_001.fastq.gz
12.19 MB
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469W_S66_L001_R2_001.fastq.gz
14.77 MB
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470WA_S219_L001_R1_001.fastq.gz
8.28 MB
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470WA_S219_L001_R2_001.fastq.gz
10.10 MB
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472W_S49_L001_R1_001.fastq.gz
11.32 MB
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472W_S49_L001_R2_001.fastq.gz
13.30 MB
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473W_S50_L001_R1_001.fastq.gz
11.61 MB
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473W_S50_L001_R2_001.fastq.gz
14.33 MB
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474W_S51_L001_R1_001.fastq.gz
11.28 MB
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474W_S51_L001_R2_001.fastq.gz
12.74 MB
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475W_S52_L001_R1_001.fastq.gz
11.22 MB
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475W_S52_L001_R2_001.fastq.gz
13.18 MB
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476W_S53_L001_R1_001.fastq.gz
10.57 MB
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476W_S53_L001_R2_001.fastq.gz
12.44 MB
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477W_S54_L001_R1_001.fastq.gz
12.25 MB
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477W_S54_L001_R2_001.fastq.gz
14.05 MB
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478W_S55_L001_R1_001.fastq.gz
13.10 MB
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478W_S55_L001_R2_001.fastq.gz
15.37 MB
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479W_S67_L001_R1_001.fastq.gz
13.82 MB
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479W_S67_L001_R2_001.fastq.gz
16.22 MB
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480W_S56_L001_R1_001.fastq.gz
13.47 MB
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480W_S56_L001_R2_001.fastq.gz
15.98 MB
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482W_S57_L001_R1_001.fastq.gz
10.66 MB
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482W_S57_L001_R2_001.fastq.gz
12.87 MB
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483W_S58_L001_R1_001.fastq.gz
11.53 MB
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483W_S58_L001_R2_001.fastq.gz
14.32 MB
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484W_S59_L001_R1_001.fastq.gz
10.96 MB
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484W_S59_L001_R2_001.fastq.gz
12.99 MB
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485W_S60_L001_R1_001.fastq.gz
10.48 MB
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485W_S60_L001_R2_001.fastq.gz
12.54 MB
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485WA_S220_L001_R1_001.fastq.gz
10.08 MB
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485WA_S220_L001_R2_001.fastq.gz
12.35 MB
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486W_S68_L001_R1_001.fastq.gz
11.60 MB
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486W_S68_L001_R2_001.fastq.gz
13.75 MB
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487W_S69_L001_R1_001.fastq.gz
11.58 MB
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487W_S69_L001_R2_001.fastq.gz
13.58 MB
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488W_S70_L001_R1_001.fastq.gz
11.01 MB
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488W_S70_L001_R2_001.fastq.gz
12.56 MB
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489W_S71_L001_R1_001.fastq.gz
11.03 MB
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489W_S71_L001_R2_001.fastq.gz
13.25 MB
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489WA_S224_L001_R1_001.fastq.gz
9.29 MB
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489WA_S224_L001_R2_001.fastq.gz
11.37 MB
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490W_S72_L001_R1_001.fastq.gz
13.68 MB
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490W_S72_L001_R2_001.fastq.gz
16.75 MB
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491W_S73_L001_R1_001.fastq.gz
12.51 MB
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491W_S73_L001_R2_001.fastq.gz
15.74 MB
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492W_S74_L001_R1_001.fastq.gz
10.75 MB
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492W_S74_L001_R2_001.fastq.gz
13.45 MB
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493W_S75_L001_R1_001.fastq.gz
9.62 MB
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493W_S75_L001_R2_001.fastq.gz
10.90 MB
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494W_S76_L001_R1_001.fastq.gz
10.98 MB
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494W_S76_L001_R2_001.fastq.gz
13.75 MB
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495W_S77_L001_R1_001.fastq.gz
11.22 MB
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495W_S77_L001_R2_001.fastq.gz
13.31 MB
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496W_S78_L001_R1_001.fastq.gz
11.18 MB
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496W_S78_L001_R2_001.fastq.gz
13.16 MB
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497W_S79_L001_R1_001.fastq.gz
11.73 MB
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497W_S79_L001_R2_001.fastq.gz
14.94 MB
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498W_S80_L001_R1_001.fastq.gz
11.62 MB
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498W_S80_L001_R2_001.fastq.gz
14.41 MB
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499W_S81_L001_R1_001.fastq.gz
9.48 MB
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499W_S81_L001_R2_001.fastq.gz
11.98 MB
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499WA_S225_L001_R1_001.fastq.gz
5.64 MB
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499WA_S225_L001_R2_001.fastq.gz
5.98 MB
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500W_S61_L001_R1_001.fastq.gz
9.65 MB
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500W_S61_L001_R2_001.fastq.gz
12.41 MB
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501W_S62_L001_R1_001.fastq.gz
11.53 MB
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501W_S62_L001_R2_001.fastq.gz
13.70 MB
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501WA_S226_L001_R1_001.fastq.gz
5.61 MB
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501WA_S226_L001_R2_001.fastq.gz
5.92 MB
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502W_S63_L001_R1_001.fastq.gz
9.70 MB
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502W_S63_L001_R2_001.fastq.gz
12.18 MB
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503W_S82_L001_R1_001.fastq.gz
11.20 MB
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503W_S82_L001_R2_001.fastq.gz
14.10 MB
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504W_S83_L001_R1_001.fastq.gz
12.07 MB
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504W_S83_L001_R2_001.fastq.gz
14.55 MB
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505W_S84_L001_R1_001.fastq.gz
10.48 MB
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505W_S84_L001_R2_001.fastq.gz
12.45 MB
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505WG_S230_L001_R1_001.fastq.gz
9.96 MB
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505WG_S230_L001_R2_001.fastq.gz
11.81 MB
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505WG2_S232_L001_R1_001.fastq.gz
10.74 MB
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505WG2_S232_L001_R2_001.fastq.gz
12.34 MB
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505WI_S231_L001_R1_001.fastq.gz
11.84 MB
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505WI_S231_L001_R2_001.fastq.gz
14.30 MB
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505WI2_S233_L001_R1_001.fastq.gz
5.29 MB
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505WI2_S233_L001_R2_001.fastq.gz
5.42 MB
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506W_S85_L001_R1_001.fastq.gz
10.35 MB
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506W_S85_L001_R2_001.fastq.gz
12.91 MB
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507W_S86_L001_R1_001.fastq.gz
10.98 MB
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507W_S86_L001_R2_001.fastq.gz
13.27 MB
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508W_S87_L001_R1_001.fastq.gz
11.06 MB
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508W_S87_L001_R2_001.fastq.gz
13.98 MB
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508WA_S227_L001_R1_001.fastq.gz
11.65 MB
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508WA_S227_L001_R2_001.fastq.gz
13.95 MB
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509W_S88_L001_R1_001.fastq.gz
10.47 MB
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509W_S88_L001_R2_001.fastq.gz
13.22 MB
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510W_S89_L001_R1_001.fastq.gz
14.32 MB
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510W_S89_L001_R2_001.fastq.gz
17.59 MB
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511W_S90_L001_R1_001.fastq.gz
11.12 MB
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511W_S90_L001_R2_001.fastq.gz
13.59 MB
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512W_S91_L001_R1_001.fastq.gz
11.10 MB
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512W_S91_L001_R2_001.fastq.gz
13.14 MB
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513W_S92_L001_R1_001.fastq.gz
10.67 MB
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513W_S92_L001_R2_001.fastq.gz
12.95 MB
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514W_S93_L001_R1_001.fastq.gz
9.82 MB
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514W_S93_L001_R2_001.fastq.gz
11.61 MB
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515W_S94_L001_R1_001.fastq.gz
12.09 MB
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515W_S94_L001_R2_001.fastq.gz
14.55 MB
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516W_S95_L001_R1_001.fastq.gz
13.40 MB
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516W_S95_L001_R2_001.fastq.gz
16.31 MB
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517W_S97_L001_R1_001.fastq.gz
11.96 MB
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517W_S97_L001_R2_001.fastq.gz
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README.md
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VertDB.fasta
19.02 GB
Abstract
The white shark (Carcharodon carcharias) is one of the world's largest apex predators found throughout the world's temperate and subtropical marine environments. However, the species has suffered significant declines in recent decades and effective conservation programs require a sound knowledge of white shark biology and ecology. In particular, information on white shark diet across life stages and the species' range is needed to identify critical trophic interactions supporting shark populations and to predict the resilience of white sharks to environmental changes. In this study, we reassess the diet and trophic ecology of white sharks via the genetic analyses of cloacal swabs from 214 juvenile and subadult sharks from eastern Australia. Our findings are largely consistent with those of previous studies based on visual analyses of gut contents but highlight the unprecedented taxonomic resolution of prey items offered by genomic assessments of shark cloacal swabs. Diets consisted primarily of ray-finned fishes, with Mugiliformes, Carangiformes, Perciformes, and Scombriformes being dominant prey taxa, but with elasmobranchs, marine mammals, and birds also being common dietary constituents. Statistical analyses revealed a significant effect of sex and sampling location on diet composition, indicating biological and spatial variability in diets and predatory behavior. Overall, these findings support the notion that juvenile and subadult white sharks are opportunistic predators, which may provide some level of resilience to shifts in marine resources. However, frequently consumed ray-finned fishes, many of which are commercially targeted, may be key to supporting white shark populations in eastern Australia. This study represents the most comprehensive analysis of juvenile and subadult white shark diets performed to date and provides added confidence in the genomic analysis of cloacal swabs for dietary assessments of predatory species. These results are expected to help inform management geared toward conserving this important marine predator across the world's oceans.