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Data from: Evolution of dispersal, habit, and pollination in Africa pushed Apocynaceae diversification after the Eocene-Oligocene climate transition

Citation

Nürk, Nicolai M. et al. (2021), Data from: Evolution of dispersal, habit, and pollination in Africa pushed Apocynaceae diversification after the Eocene-Oligocene climate transition, Dryad, Dataset, https://doi.org/10.5061/dryad.vq83bk3sj

Abstract

Apocynaceae (the dogbane and milkweed family) is one of the ten largest flowering plant families, with approximately 5,350 species and diverse morphology and ecology, ranging from large trees and lianas that are emblematic of tropical rainforests, to herbs in temperate grasslands, to succulents in dry, open landscapes, and to vines in a wide variety of habitats. Despite a specialized and conservative basic floral architecture, Apocynaceae are hyperdiverse in flower size, corolla shape, and especially derived floral morphological features. These are mainly associated with the development of corolline and/or staminal coronas and a spectrum of integration of floral structures culminating with the formation of a gynostegium and pollinaria—specialized pollen dispersal units. To date, no detailed analysis has been conducted to estimate the origin and diversification of this lineage in space and time. Here, we use the most comprehensive time-calibrated phylogeny of Apocynaceae, which includes approximately 20% of the species covering all major lineages, and information on species number and distributions obtained from the most up-to-date monograph of the family to investigate the biogeographical history of the lineage and its diversification dynamics. South America, Africa, and Southeast Asia (potentially including Oceania), were recovered as the most likely ancestral area of extant Apocynaceae diversity; this tropical climatic belt in the equatorial region retained the oldest extant lineages and these three tropical regions likely represent museums of the family. Africa was confirmed as the cradle of pollinia-bearing lineages and the main source of Apocynaceae intercontinental dispersals. We detected 12 shifts toward accelerated species diversification, of which 11 were in the APSA clade (apocynoids, Periplocoideae, Secamonoideae, and Asclepiadoideae), eight of these in the pollinia-bearing lineages and six within Asclepiadoideae. Wind-dispersed comose seeds, climbing growth form, and pollinia appeared sequentially within the APSA clade and probably work synergistically in the occupation of drier and cooler habitats. Overall, we hypothesize that temporal patterns in diversification of Apocynaceae was mainly shaped by a sequence of morphological innovations that conferred higher capacity to disperse and establish in seasonal, unstable, and open habitats, which have expanded since the Eocene-Oligocene climate transition.

Methods

Phylogenetic data from Fishbein et al. (2018) Am J Bot doi: 10.1002/ajb2.1067.

Distribution data from Endress et al. (2018) “Apocynaceae,” in Flowering Plants. Eudicots. Apiales and Gentianales (except Rubiaceae), ed. J. W. Kadereit and V. Bittrich, in Families and Genera of Vascular Plants. Vol. 15, ed. K. Kubitzki (Berlin: Springer), 208–411.

Analyses are processed in the R statistical framework; all scripts are accessible through this Dryad DOI.

Usage Notes

The data file contains:

1) a metadata file "Readme_Nuerk_Apocynaceae.Biogeo.Div.txt" that details and defines the folders and files with variables, and allowable values, 

2) three folders: 

(a) DATA: the complete dataset (as CSV) and the phylogenetic tree (as NEWICK), plus a subfolder per analysis (BAMM, BioGeoBEARS, MiSSE) including analysis-specific input files derived from the complete dataset. Additionally, the original trees from Fishbein et al. 2018 are included.

(b) RESULTS: main plots and tables produced in the analyses used to prepare the results (numbered according to Figs/Tabs).

(c) RESULTS_full: contains a folder for each BAMM, MiSSE, and BioGeoBEARS analysis. Each folder contains plots (as pdf) and tables (tab-delimited text file), and the objects produced in R (as RDATA file; the workspace that contains functions and value objects created in R).

Funding

Deutsche Forschungsgemeinschaft, Award: NU292/4-1

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Award: #1514632

CNPQ – Productivity Fellowship, Award: 307396/2019-3