Data from: Capturing open ocean biodiversity: comparing environmental DNA metabarcoding to the continuous plankton recorder
Data files
Jul 31, 2020 version files 2.82 GB
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001-V4-004A_S1_L001_R1_001.fastq.gz
13.93 MB
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001-V4-004A_S1_L001_R2_001.fastq.gz
16.86 MB
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002-V4-012A_S2_L001_R1_001.fastq.gz
17.36 MB
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002-V4-012A_S2_L001_R2_001.fastq.gz
18.50 MB
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003-V4-020A_S3_L001_R1_001.fastq.gz
12.89 MB
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003-V4-020A_S3_L001_R2_001.fastq.gz
14.71 MB
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004-V4-028A_S4_L001_R1_001.fastq.gz
20.35 MB
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004-V4-028A_S4_L001_R2_001.fastq.gz
20.75 MB
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005-V4-036A_S5_L001_R1_001.fastq.gz
21.17 MB
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005-V4-036A_S5_L001_R2_001.fastq.gz
22.62 MB
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006-V4-044A_S6_L001_R1_001.fastq.gz
18.33 MB
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006-V4-044A_S6_L001_R2_001.fastq.gz
18.34 MB
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007-V4-052A_S7_L001_R1_001.fastq.gz
18.05 MB
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007-V4-052A_S7_L001_R2_001.fastq.gz
18.64 MB
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010-V4-143A_S10_L001_R1_001.fastq.gz
16.92 MB
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010-V4-143A_S10_L001_R2_001.fastq.gz
18.33 MB
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011-V4-151A_S11_L001_R1_001.fastq.gz
17.49 MB
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011-V4-151A_S11_L001_R2_001.fastq.gz
21.22 MB
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012-V4-159A_S12_L001_R1_001.fastq.gz
15.08 MB
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012-V4-159A_S12_L001_R2_001.fastq.gz
17.22 MB
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013-V4-167A_S13_L001_R1_001.fastq.gz
18.01 MB
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013-V4-167A_S13_L001_R2_001.fastq.gz
18.96 MB
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014-V4-175A_S14_L001_R1_001.fastq.gz
22.04 MB
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014-V4-175A_S14_L001_R2_001.fastq.gz
23.07 MB
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015-V4-183A_S15_L001_R1_001.fastq.gz
19.05 MB
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015-V4-183A_S15_L001_R2_001.fastq.gz
21.66 MB
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028-V4-166A_S28_L001_R1_001.fastq.gz
14.83 MB
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028-V4-166A_S28_L001_R2_001.fastq.gz
19.18 MB
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029-V4-167A_S29_L001_R1_001.fastq.gz
16.70 MB
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029-V4-167A_S29_L001_R2_001.fastq.gz
19.81 MB
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030-V4-168A_S30_L001_R1_001.fastq.gz
16.18 MB
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030-V4-168A_S30_L001_R2_001.fastq.gz
19.30 MB
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031-V4-169A_S31_L001_R1_001.fastq.gz
16 MB
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031-V4-169A_S31_L001_R2_001.fastq.gz
20.75 MB
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032-V4-170A_S32_L001_R1_001.fastq.gz
19.19 MB
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032-V4-170A_S32_L001_R2_001.fastq.gz
23.15 MB
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039-CBR-5-01_S39_L001_R1_001.fastq.gz
25.02 MB
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039-CBR-5-01_S39_L001_R2_001.fastq.gz
28.82 MB
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040-CBR-5-02_S40_L001_R1_001.fastq.gz
28.05 MB
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040-CBR-5-02_S40_L001_R2_001.fastq.gz
32.31 MB
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041-CBR-5-03_S41_L001_R1_001.fastq.gz
19.22 MB
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041-CBR-5-03_S41_L001_R2_001.fastq.gz
22.30 MB
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045-CBR-7-01_S45_L001_R1_001.fastq.gz
30.08 MB
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045-CBR-7-01_S45_L001_R2_001.fastq.gz
33.91 MB
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047-CBR-7-03_S47_L001_R1_001.fastq.gz
22.08 MB
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047-CBR-7-03_S47_L001_R2_001.fastq.gz
27.49 MB
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048-PCR-Nve_S48_L001_R1_001.fastq-2.gz
92.06 KB
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048-PCR-Nve_S48_L001_R1_001.fastq.gz
92.06 KB
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048-PCR-Nve_S48_L001_R2_001.fastq-2.gz
114.87 KB
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048-PCR-Nve_S48_L001_R2_001.fastq.gz
114.87 KB
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18S_zOTU_data.csv
14.72 MB
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COI_V4_allzOTU_20190703.fasta
5.09 MB
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COI_zOTU_data_incl_rarefied.csv
9 MB
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Ext-Blank_S227_L001_R1_001.fastq.gz
53.22 KB
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Ext-Blank_S227_L001_R2_001.fastq.gz
58.93 KB
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Ext-Blank-2_S255_L001_R1_001.fastq.gz
364.08 KB
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Ext-Blank-2_S255_L001_R2_001.fastq.gz
455.88 KB
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Ext-Blank-mouse_S228_L001_R1_001.fastq.gz
3.20 MB
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Ext-Blank-mouse_S228_L001_R2_001.fastq.gz
4.94 MB
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Ext-Blank-mouse-2_S256_L001_R1_001.fastq.gz
5.01 MB
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Ext-Blank-mouse-2_S256_L001_R2_001.fastq.gz
8.28 MB
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Figures_and_Analyses_R_Markdown_2020-06-25.html
2.32 MB
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firstroundsequencing_TagsCOI.csv
14.60 KB
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morphology_data.csv
12.54 KB
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PCR-Nve-1_S96_L001_R1_001.fastq.gz
126.91 KB
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PCR-Nve-1_S96_L001_R2_001.fastq.gz
147.72 KB
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PCR-Nve-2_S192_L001_R1_001.fastq.gz
31.60 KB
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PCR-Nve-2_S192_L001_R2_001.fastq.gz
36.93 KB
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PCR-Nve-3_S257_L001_R1_001.fastq.gz
28.15 KB
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PCR-Nve-3_S257_L001_R2_001.fastq.gz
31.70 KB
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Pipeline_processing.R
19.23 KB
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sample_map_incl_rarefied.csv
23.53 KB
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secondsequencing_TagsCOI.csv
2.94 KB
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V4-004A_S4_L001_R1_001.fastq.gz
6.12 MB
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V4-004A_S4_L001_R2_001.fastq.gz
6.68 MB
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V4-005A_S5_L001_R1_001.fastq.gz
5.78 MB
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V4-005A_S5_L001_R2_001.fastq.gz
6.60 MB
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V4-006A_S6_L001_R1_001.fastq.gz
6.18 MB
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V4-006A_S6_L001_R2_001.fastq.gz
6.99 MB
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V4-007A_S7_L001_R1_001.fastq.gz
1.94 MB
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V4-007A_S7_L001_R2_001.fastq.gz
2.09 MB
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V4-008A_S8_L001_R1_001.fastq.gz
5.81 MB
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V4-008A_S8_L001_R2_001.fastq.gz
6.54 MB
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V4-009A_S9_L001_R1_001.fastq.gz
3.39 MB
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V4-009A_S9_L001_R2_001.fastq.gz
3.98 MB
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V4-010A_S10_L001_R1_001.fastq.gz
3.89 MB
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V4-010A_S10_L001_R2_001.fastq.gz
4.45 MB
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V4-011A_S11_L001_R1_001.fastq.gz
5.02 MB
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V4-011A_S11_L001_R2_001.fastq.gz
6.09 MB
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V4-012A_S12_L001_R1_001.fastq.gz
4.18 MB
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V4-012A_S12_L001_R2_001.fastq.gz
4.92 MB
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V4-013A_S13_L001_R1_001.fastq.gz
5.71 MB
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V4-013A_S13_L001_R2_001.fastq.gz
6.41 MB
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V4-014A_S14_L001_R1_001.fastq.gz
1.89 MB
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V4-014A_S14_L001_R2_001.fastq.gz
2.01 MB
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V4-015A_S15_L001_R1_001.fastq.gz
5.07 MB
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V4-015A_S15_L001_R2_001.fastq.gz
5.95 MB
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V4-016A_S16_L001_R1_001.fastq.gz
5.75 MB
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V4-016A_S16_L001_R2_001.fastq.gz
6.67 MB
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V4-017A_S17_L001_R1_001.fastq.gz
5.78 MB
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V4-017A_S17_L001_R2_001.fastq.gz
6.84 MB
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V4-018A_S18_L001_R1_001.fastq.gz
6.24 MB
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V4-018A_S18_L001_R2_001.fastq.gz
7.17 MB
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V4-019A_S19_L001_R1_001.fastq.gz
6.05 MB
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V4-019A_S19_L001_R2_001.fastq.gz
6.87 MB
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V4-02_S230_L001_R1_001.fastq.gz
5.44 MB
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V4-02_S230_L001_R2_001.fastq.gz
7.55 MB
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V4-020A_S20_L001_R1_001.fastq.gz
6.82 MB
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V4-020A_S20_L001_R2_001.fastq.gz
7.70 MB
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V4-021A_S21_L001_R1_001.fastq.gz
7.15 MB
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V4-021A_S21_L001_R2_001.fastq.gz
8.22 MB
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V4-022A_S22_L001_R1_001.fastq.gz
7.61 MB
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V4-022A_S22_L001_R2_001.fastq.gz
8.30 MB
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V4-023A_S23_L001_R1_001.fastq.gz
6.66 MB
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V4-023A_S23_L001_R2_001.fastq.gz
7.14 MB
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V4-024A_S24_L001_R1_001.fastq.gz
4.47 MB
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V4-024A_S24_L001_R2_001.fastq.gz
5.16 MB
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V4-025A_S25_L001_R1_001.fastq.gz
5.38 MB
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V4-025A_S25_L001_R2_001.fastq.gz
6.28 MB
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V4-026A_S26_L001_R1_001.fastq.gz
4.18 MB
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V4-026A_S26_L001_R2_001.fastq.gz
4.88 MB
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V4-027A_S27_L001_R1_001.fastq.gz
5.96 MB
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V4-027A_S27_L001_R2_001.fastq.gz
6.86 MB
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V4-028A_S28_L001_R1_001.fastq.gz
5.68 MB
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V4-028A_S28_L001_R2_001.fastq.gz
6.54 MB
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V4-029A_S29_L001_R1_001.fastq.gz
5.05 MB
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V4-029A_S29_L001_R2_001.fastq.gz
6.10 MB
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V4-03_S231_L001_R1_001.fastq.gz
6.75 MB
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V4-03_S231_L001_R2_001.fastq.gz
9.44 MB
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V4-032A_S32_L001_R1_001.fastq.gz
4.39 MB
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V4-032A_S32_L001_R2_001.fastq.gz
5.14 MB
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V4-033A_S33_L001_R1_001.fastq.gz
5.02 MB
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V4-033A_S33_L001_R2_001.fastq.gz
6.15 MB
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V4-034A_S34_L001_R1_001.fastq.gz
6.33 MB
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V4-034A_S34_L001_R2_001.fastq.gz
7.05 MB
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V4-035A_S35_L001_R1_001.fastq.gz
5.56 MB
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V4-035A_S35_L001_R2_001.fastq.gz
6.46 MB
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V4-036A_S36_L001_R1_001.fastq.gz
7.07 MB
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V4-036A_S36_L001_R2_001.fastq.gz
7.90 MB
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V4-037A_S37_L001_R1_001.fastq.gz
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V4-037A_S37_L001_R2_001.fastq.gz
1.03 MB
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V4-038A_S38_L001_R1_001.fastq.gz
6.14 MB
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V4-038A_S38_L001_R2_001.fastq.gz
6.88 MB
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V4-039A_S39_L001_R1_001.fastq.gz
6.81 MB
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V4-039A_S39_L001_R2_001.fastq.gz
7.61 MB
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V4-04_S232_L001_R1_001.fastq.gz
6.12 MB
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V4-04_S232_L001_R2_001.fastq.gz
8.16 MB
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V4-040_S193_L001_R1_001.fastq.gz
6.24 MB
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V4-040_S193_L001_R2_001.fastq.gz
8.92 MB
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V4-040A_S40_L001_R1_001.fastq.gz
5.50 MB
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V4-040A_S40_L001_R2_001.fastq.gz
6.44 MB
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V4-041_S194_L001_R1_001.fastq.gz
8.56 MB
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V4-041_S194_L001_R2_001.fastq.gz
10.80 MB
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V4-041A_S41_L001_R1_001.fastq.gz
4.80 MB
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V4-041A_S41_L001_R2_001.fastq.gz
5.51 MB
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V4-042_S195_L001_R1_001.fastq.gz
6.64 MB
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V4-042_S195_L001_R2_001.fastq.gz
8.28 MB
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V4-042A_S42_L001_R1_001.fastq.gz
2.70 MB
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V4-042A_S42_L001_R2_001.fastq.gz
3.08 MB
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V4-043_S196_L001_R1_001.fastq.gz
8.59 MB
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V4-043_S196_L001_R2_001.fastq.gz
10.39 MB
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V4-043A_S43_L001_R1_001.fastq.gz
5.74 MB
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V4-043A_S43_L001_R2_001.fastq.gz
6.40 MB
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V4-044_S197_L001_R1_001.fastq.gz
5.87 MB
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V4-044_S197_L001_R2_001.fastq.gz
7.03 MB
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V4-044A_S44_L001_R1_001.fastq.gz
5.22 MB
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V4-044A_S44_L001_R2_001.fastq.gz
5.98 MB
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V4-045_S198_L001_R1_001.fastq.gz
6.30 MB
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V4-045_S198_L001_R2_001.fastq.gz
7.54 MB
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V4-045A_S45_L001_R1_001.fastq.gz
4.97 MB
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V4-045A_S45_L001_R2_001.fastq.gz
5.61 MB
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V4-046_S199_L001_R1_001.fastq.gz
6.13 MB
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V4-046_S199_L001_R2_001.fastq.gz
7.26 MB
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V4-046A_S46_L001_R1_001.fastq.gz
3.78 MB
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V4-046A_S46_L001_R2_001.fastq.gz
4.29 MB
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V4-047_S200_L001_R1_001.fastq.gz
5.66 MB
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V4-047_S200_L001_R2_001.fastq.gz
7.07 MB
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V4-047A_S47_L001_R1_001.fastq.gz
3.65 MB
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V4-047A_S47_L001_R2_001.fastq.gz
4.31 MB
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V4-048_S201_L001_R1_001.fastq.gz
5.68 MB
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V4-048_S201_L001_R2_001.fastq.gz
7.92 MB
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V4-048A_S48_L001_R1_001.fastq.gz
5.52 MB
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V4-048A_S48_L001_R2_001.fastq.gz
6.35 MB
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V4-049_S202_L001_R1_001.fastq.gz
7.29 MB
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V4-049_S202_L001_R2_001.fastq.gz
9.01 MB
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V4-049A_S49_L001_R1_001.fastq.gz
5.53 MB
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V4-049A_S49_L001_R2_001.fastq.gz
6.53 MB
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V4-05_S233_L001_R1_001.fastq.gz
5.79 MB
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V4-05_S233_L001_R2_001.fastq.gz
8.08 MB
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V4-050_S203_L001_R1_001.fastq.gz
7.13 MB
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V4-050_S203_L001_R2_001.fastq.gz
10.20 MB
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V4-050A_S50_L001_R1_001.fastq.gz
5.64 MB
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V4-050A_S50_L001_R2_001.fastq.gz
6.35 MB
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V4-051_S204_L001_R1_001.fastq.gz
3.85 MB
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V4-051_S204_L001_R2_001.fastq.gz
5.12 MB
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V4-051A_S51_L001_R1_001.fastq.gz
4.75 MB
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V4-051A_S51_L001_R2_001.fastq.gz
5.57 MB
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V4-052_S205_L001_R1_001.fastq.gz
6.13 MB
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V4-052_S205_L001_R2_001.fastq.gz
7.89 MB
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V4-052A_S52_L001_R1_001.fastq.gz
6.16 MB
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V4-052A_S52_L001_R2_001.fastq.gz
6.79 MB
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V4-053_S206_L001_R1_001.fastq.gz
6.28 MB
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V4-053_S206_L001_R2_001.fastq.gz
6.80 MB
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V4-053A_S53_L001_R1_001.fastq.gz
6.11 MB
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V4-053A_S53_L001_R2_001.fastq.gz
6.69 MB
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V4-054_S207_L001_R1_001.fastq.gz
6.73 MB
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V4-054_S207_L001_R2_001.fastq.gz
8.56 MB
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V4-054A_S54_L001_R1_001.fastq.gz
1.88 MB
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V4-054A_S54_L001_R2_001.fastq.gz
1.92 MB
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V4-055_S208_L001_R1_001.fastq.gz
7.03 MB
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V4-055_S208_L001_R2_001.fastq.gz
9 MB
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V4-055A_S55_L001_R1_001.fastq.gz
6.81 MB
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V4-055A_S55_L001_R2_001.fastq.gz
7.56 MB
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V4-056_S209_L001_R1_001.fastq.gz
8.73 MB
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V4-056_S209_L001_R2_001.fastq.gz
10.47 MB
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V4-056A_S56_L001_R1_001.fastq.gz
5.80 MB
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V4-056A_S56_L001_R2_001.fastq.gz
6.55 MB
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V4-057_S210_L001_R1_001.fastq.gz
8.34 MB
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V4-057_S210_L001_R2_001.fastq.gz
9.66 MB
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V4-058_S211_L001_R1_001.fastq.gz
8.33 MB
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V4-058_S211_L001_R2_001.fastq.gz
10.18 MB
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V4-059_S212_L001_R1_001.fastq.gz
8.25 MB
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V4-059_S212_L001_R2_001.fastq.gz
10.09 MB
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V4-06_S234_L001_R1_001.fastq.gz
3.51 MB
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V4-06_S234_L001_R2_001.fastq.gz
4.64 MB
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V4-060_S213_L001_R1_001.fastq.gz
8.12 MB
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V4-060_S213_L001_R2_001.fastq.gz
9.89 MB
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V4-061_S214_L001_R1_001.fastq.gz
7.92 MB
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V4-061_S214_L001_R2_001.fastq.gz
9.19 MB
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V4-062_S215_L001_R1_001.fastq.gz
7.87 MB
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V4-062_S215_L001_R2_001.fastq.gz
9.01 MB
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V4-063_S216_L001_R1_001.fastq.gz
5.40 MB
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V4-063_S216_L001_R2_001.fastq.gz
6.63 MB
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V4-064_S217_L001_R1_001.fastq.gz
7.15 MB
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V4-064_S217_L001_R2_001.fastq.gz
8.19 MB
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V4-065_S218_L001_R1_001.fastq.gz
6.94 MB
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V4-065_S218_L001_R2_001.fastq.gz
8.27 MB
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V4-066_S219_L001_R1_001.fastq.gz
7.48 MB
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V4-066_S219_L001_R2_001.fastq.gz
9.35 MB
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V4-067_S220_L001_R1_001.fastq.gz
3.12 MB
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V4-067_S220_L001_R2_001.fastq.gz
4.37 MB
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V4-068_S221_L001_R1_001.fastq.gz
6.30 MB
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V4-068_S221_L001_R2_001.fastq.gz
8.27 MB
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V4-069_S222_L001_R1_001.fastq.gz
8.82 MB
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V4-069_S222_L001_R2_001.fastq.gz
10.71 MB
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V4-07_S235_L001_R1_001.fastq.gz
6.53 MB
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V4-07_S235_L001_R2_001.fastq.gz
8.85 MB
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V4-070_S223_L001_R1_001.fastq.gz
7.57 MB
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V4-070_S223_L001_R2_001.fastq.gz
9.18 MB
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V4-071_S224_L001_R1_001.fastq.gz
6.56 MB
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V4-071_S224_L001_R2_001.fastq.gz
7.82 MB
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V4-08_S236_L001_R1_001.fastq.gz
3.37 MB
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V4-08_S236_L001_R2_001.fastq.gz
4.66 MB
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V4-09_S237_L001_R1_001.fastq.gz
6.23 MB
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V4-09_S237_L001_R2_001.fastq.gz
8.42 MB
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V4-10_S238_L001_R1_001.fastq.gz
6.08 MB
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V4-10_S238_L001_R2_001.fastq.gz
8.62 MB
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V4-11_S239_L001_R1_001.fastq.gz
4.49 MB
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V4-11_S239_L001_R2_001.fastq.gz
6.40 MB
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V4-12_S240_L001_R1_001.fastq.gz
5.87 MB
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8.29 MB
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V4-13_S241_L001_R1_001.fastq.gz
7.21 MB
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10.36 MB
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V4-137A_S70_L001_R1_001.fastq.gz
7.21 MB
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8.05 MB
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5.89 MB
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6.63 MB
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V4-139A_S72_L001_R1_001.fastq.gz
3.88 MB
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4.62 MB
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V4-14_S242_L001_R1_001.fastq.gz
5.55 MB
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7.65 MB
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5.16 MB
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6.08 MB
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4.13 MB
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4.75 MB
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5.08 MB
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5.98 MB
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4.21 MB
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4.90 MB
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4.30 MB
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5.63 MB
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6.55 MB
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V4-146A_S79_L001_R1_001.fastq.gz
1.67 MB
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4.84 MB
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6 MB
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6.77 MB
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6.62 MB
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9.08 MB
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5.15 MB
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6.15 MB
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5.06 MB
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5.76 MB
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V4-157A_S90_L001_R1_001.fastq.gz
4.27 MB
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4.86 MB
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4.47 MB
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5.21 MB
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4.59 MB
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V4-159A_S92_L001_R2_001.fastq.gz
5.80 MB
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V4-16_S244_L001_R1_001.fastq.gz
6.79 MB
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V4-16_S244_L001_R2_001.fastq.gz
9.82 MB
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V4-166A_S100_L001_R1_001.fastq.gz
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V4-166A_S100_L001_R2_001.fastq.gz
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V4-167A_S101_L001_R1_001.fastq.gz
32.99 KB
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V4-167A_S101_L001_R2_001.fastq.gz
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6.31 MB
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8.68 MB
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V4-170A_S104_L001_R1_001.fastq.gz
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V4-171A_S105_L001_R1_001.fastq.gz
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7.57 MB
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V4-172A_S106_L001_R1_001.fastq.gz
6.38 MB
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V4-174A_S108_L001_R1_001.fastq.gz
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10.68 MB
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V4-181A_S115_L001_R1_001.fastq.gz
6.80 MB
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V4-181A_S115_L001_R2_001.fastq.gz
8.06 MB
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V4-182A_S116_L001_R1_001.fastq.gz
7.70 MB
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9.01 MB
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V4-183A_S117_L001_R1_001.fastq.gz
6.38 MB
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7.16 MB
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V4-184A_S118_L001_R1_001.fastq.gz
7.57 MB
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8.61 MB
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V4-185A_S119_L001_R1_001.fastq.gz
6.82 MB
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7.87 MB
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3.76 MB
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4.61 MB
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V4-19_S247_L001_R1_001.fastq.gz
7.55 MB
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10.15 MB
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8.04 MB
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11.33 MB
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4.95 MB
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7.23 MB
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4.87 MB
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6.28 MB
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Abstract
Methods
See materials and methods of Molecular Ecology paper "Capturing open ocean biodiversity: comparing environmental DNA metabarcoding to the continuous plankton recorder"
Usage notes
All raw fastq files were uploaded (gz compressed). They originate from two separate sequencing runs - file names starting with "V4..." are from the first run, file names starting with e.g. "003_V4..." are from the second run. Sample specific tags are in the respective COITags.csv files.
The pipeline to process the raw data is in the file "Pipeline_processing.R".
The html output of the R markdown code to analyse the data (includes code for all figures and supplemental material) is in the file Figures_and_Analyses_R_Markdown_2020-06-25.html, and all processed data input files are provided in .csv or .fasta format.