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Dryad

Dipsacales four locus supermatrix assembled with PyNCBIminer

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Nov 29, 2024 version files 23.62 MB

Abstract

PyNCBIminer is a user-friendly software that automates the assembly of large DNA datasets from GenBank for phylogenetic reconstruction using the supermatrix method.To evaluate the sensitivity of PyNCBIminer to initial queries, we downloaded four DNA markers (ITS, matK, rbcL and trnLintron-trnF) of Dipsacales using two distinct initial query sets. The experiments were performed on a personal computer featuring a 13th Gen Intel(R) Core (TM) i5-1340P 1.90 GHz processor and 32.0 GB of RAM. Run 1 used six well-aligned sequences from six angiosperm orders as default initial queries in PyNCBIminer, while Run 2 used six sequences from six genera within the order Dipsacales.