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The complete mitochondrial genome of Eutrichosiphum pasaniae (Okajima, 1908) (Hemiptera: Aphididae: Greenideinae)

Citation

Li, Cailing et al. (2021), The complete mitochondrial genome of Eutrichosiphum pasaniae (Okajima, 1908) (Hemiptera: Aphididae: Greenideinae), Dryad, Dataset, https://doi.org/10.5061/dryad.zkh189388

Abstract

In this study, we sequenced the complete mitochondrial genome of Eutrichosiphum pasaniae through Illumina platform. The circular mitogenome is 16,500 bp in length and composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), a large control region and a special repeat region. The nucleotide composition of whole mitogenome is strongly AT-biased (85.5%). All PCGs start with ATN and end with TAA except for cox1 which terminates with an incomplete stop codon T. All tRNAs have a typical clover-leaf secondary structure except for trnS (AGN). The lengths of rrnL, rrnS and control region are 1276, 774 and 996 bp, respectively. The repeat region with a length of 909 bp is located between trnE and trnF and consists of 4.1 repeat units. The phylogenetic tree supports the sister relationship of Eutrichosiphum pasaniae and Greenidea psidii.

Usage Notes

The maximum-likelihood phylogenetic tree was constructed with RAxML v8.2.10 under the GTR+I+G model, based on the whole mitogenome sequences of E. pasaniae and 24 other aphid species. 

The compressed file Phylogenetic_analysis includes:

 The sequence of gene used

37_genes.phy

Gene partition

partition.txt

The maximum-likelihood tree

RAxML_bestTree.T1

RAxML_bipartitions.T1

RAxML_bipartitionsBranchLabels.T1

RAxML_bootstrap.T1